Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00601 ATGACCAGAGGCAAGGTGAAGCTTGAACTCATTGCCAATGAATCATCCAGGCGTGCTGCCTTCAGAAAGAGAAAGAAGGGTCTGACGAAGAAGTTGGATGAACTCACCAAACTCTGCGATGTTGAGGCCTGTGCTATTGTCTATGGGCCCGGCGATGATCAGCCAACCCTTTGGCCTTCCCCAGCGGGGGTCCATGCTGCACTTCAGAGGTTCAGGGCAATGCCTGACATGGAACAGACCAGGAAAATGGTGAACCTGGAGAGCCACACCAGGGAGAGGATCAGCAAAACTCAAGAGCAGCTCAGGAGGCTGACCCAGGAAAATGAAGAGAAGCGACTGAACTTGATGATTTATGAGTACCTTGCCTCCGAAACGTTTCAGGCGAAACCGACGAATTTGGCTGATTTGGATGGGATGCGAGCGTTGCTTGGCCAGAACCTGGAGAAGATCACTCGAAGACTGGCGATGCTGAATATGACTGAGACTCAGGATGAGGCAAGCTCAAGTCGCCATCCACCGAATGTGGCTATGACTCAGGGAGAGGCGAGCTCTAGTCACCATCCAATGAATTTGGTTGGGACTCTGGGTGAGCCAAGCTCAAGTCTCCACCCACTGTATATGGTTGGGGCTCAGGGTAAGCCAAGCTCAAGTCACCATCCTCTGAATTTGGCTGGGACTCTGGGTGAGCCAAGCTCAAGTCACCATCCACTGAATTTGTTTGGGACTCTGGGTGACCCAAGCTCAAGTCTCCAGCCACTCTATATGGTTGGGACTCAGGGTAAGCCAAGCTCAAGTCAGCATCCACTGAATTTGGCTGGAACTCTGGGGGAGCCAAGCTCAAGTCTCCAACCACTGTATATGGCTGGGACTCAGGTTAAGCCAAGCTCAATTCACTATCCACTGAACTTGGCAGGGACTCTGGGTGAGCCAAGCTCAAGTCTCCAGCCACTAACTGTGGCTGGGACGCAAGGTGAGGCAAGCTCGGGTCACCATCTGAGTCTAAACATCAATACGCTACCCACCTTCTTTTAG 1032 0.5223 MTRGKVKLELIANESSRRAAFRKRKKGLTKKLDELTKLCDVEACAIVYGPGDDQPTLWPSPAGVHAALQRFRAMPDMEQTRKMVNLESHTRERISKTQEQLRRLTQENEEKRLNLMIYEYLASETFQAKPTNLADLDGMRALLGQNLEKITRRLAMLNMTETQDEASSSRHPPNVAMTQGEASSSHHPMNLVGTLGEPSSSLHPLYMVGAQGKPSSSHHPLNLAGTLGEPSSSHHPLNLFGTLGDPSSSLQPLYMVGTQGKPSSSQHPLNLAGTLGEPSSSLQPLYMAGTQVKPSSIHYPLNLAGTLGEPSSSLQPLTVAGTQGEASSGHHLSLNINTLPTFF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00601 343 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach13g00601 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach13g00601 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach13g00601 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach13g00601 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Bach13g00601 343 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bach13g00601 343 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Bach13g00601 343 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bach13g00601 343 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bach13g00601 343 Coils Coil 87 114 - -
Bach13g00601 343 Coils Coil 18 38 - -
Bach13g00601 343 PANTHER MADS BOX PROTEIN 3 151 - -
Bach13g00601 343 MobiDBLite consensus disorder prediction 161 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00601 Bach-Chr13 11459258 11460289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00601 1 238 Type I MADS-box Gene Family AT5G48670 36.515 8.65e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach13g00601 SRF-TF 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00601 - - adu:107480964 169.859