Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00564 TTCGCGGCTACGTGACACTGCCAACTGAGCAGCTGAGCTTTTTGTGCTACAAAGCGTGAGAGGGCATTGCAGTTCTCCTTCTCGGAGCCATGGCCACCACCACAACCGCCGCTGATGCTTCGGGCCAGCTTTCACAGAAGGAGTCTGACATCCAGATGATGTTGGCCGCCGAGGTTCACCTCGGTACCAAAAACTGTGACTTTCAGATGGAGCGCTATGTCTTCAAGCGCCGCAACGATGGTATTTACATAATCAACCTTGGTAAAACATGGGAGAAACTTCAACTTGCTGCTAGGGTTATTGTTGCCATTGAAAACCCTCAGGATATTATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCAGTTCTCAAGTTTGCCCAGTACACTGGTGCCCATGCCATTGCCGGAAGACATACTCCTGGTACATTCACCAATCAGCTCCAGACATCATATAGTGAGCCCCGCCTTCTCATTCTGACTGATCCAAGAACAGACCACCAGCCCATTAAGGAAGCTGCTCTGGGAAATATACCAACTATTGCTTTCTGTGACACTGATTCTCCTATGCGTTATGTTGACATTGGCATTCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTATTAGCCAGGATGGTACTGCAGATGAGGGGTACTATTCGTCCAGGGCTCAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGACGAAGTTCCTCCTGTACAAGACTATGCCATAGCAGACTTCAATACCAGTGCTATTGGTGGCATTGCTGCTGGTGGACAGTGGCCTGCTGCAGCTGATCAAACCTGGACTGATTCAGTTCCACAACCAATTCCAGCAGTTCCTGCTGCCAGCTGGACTCCAGAAGCTGTTGCAGGAGATTGGGGCGAACCTGTTAGTGCACCTCAAGTTCCTCCTCTCGGAATTGAAAATGTTCCTGCTACTGGCTGGGATTAA 1007 0.4926 MATTTTAADASGQLSQKESDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEDEVPPVQDYAIADFNTSAIGGIAAGGQWPAAADQTWTDSVPQPIPAVPAASWTPEAVAGDWGEPVSAPQVPPLGIENVPATGWD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00564 305 FunFam 40S ribosomal protein SA 20 226 - -
Bach13g00564 305 Hamap 40S ribosomal protein SA [rps-0]. 8 260 IPR027498 GO:0003735|GO:0006412|GO:0015935
Bach13g00564 305 Pfam Ribosomal protein S2 24 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 Pfam Ribosomal protein S2 122 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 NCBIfam 30S ribosomal protein S2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Bach13g00564 305 MobiDBLite consensus disorder prediction 286 305 - -
Bach13g00564 305 ProSitePatterns Ribosomal protein S2 signature 1. 21 32 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 PANTHER 40S RIBOSOMAL PROTEIN SA 12 291 IPR005707 GO:0003735|GO:0006412|GO:0015935
Bach13g00564 305 Gene3D - 20 224 - -
Bach13g00564 305 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00564 305 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00564 Bach-Chr13 11012523 11014842 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00564 8 305 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.333 9.63e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00564 K02998 - gmx:548014 515.768