Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00560 ATGAATAAAGGCGGAGCAGGAGCAGTGGGGCTAATAGGAAGTGGTGGTGGTGCTGGAAGTGGACCCACAGCAGCGCCTGCGGCTCAGAAGCAAAAGATTTTGTTGTCGAGAGTAGAAGGTATTTACATAAACAACCTTGGTAAAGCATGGGAAAAGCTTCAACTTGCTGCCAGGGTTATTGTTGCCATTGAAATCCCTCGGGCTATTGTTAAGTCTGCCAGGCATAATGGTCAGAGAGCAGTTCTCAAGTTTGCCCAGTACACTGGCGCCCATGCAATAGCTAGAAGACACACTCCTGGTACATTCACCAATCAGCTACAGACATCATATGGTGAGCCTCACCTTCTCATTTTGACTGATCCAAGAACGGACCAGCAGCCCATTTATGAAGCTGCTCTTGGAAATATACCAACTATTGCTTTCTGTGACACTGATTCTCAAATGCGTCATGCTGACACTGGCATTCCTGCGAATAATAAGGGGAAGCATAGCATCGATTGTCTCTTTTGGCTATTAGCCAGGATGGTACTGCCGATGAGGGGTGGGATGTGA 552 0.4746 MNKGGAGAVGLIGSGGGAGSGPTAAPAAQKQKILLSRVEGIYINNLGKAWEKLQLAARVIVAIEIPRAIVKSARHNGQRAVLKFAQYTGAHAIARRHTPGTFTNQLQTSYGEPHLLILTDPRTDQQPIYEAALGNIPTIAFCDTDSQMRHADTGIPANNKGKHSIDCLFWLLARMVLPMRGGM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00560 183 CDD RPS2 39 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 Pfam Ribosomal protein S2 110 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 PRINTS Ribosomal protein S2 signature 40 49 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 PRINTS Ribosomal protein S2 signature 151 165 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 PRINTS Ribosomal protein S2 signature 130 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 PRINTS Ribosomal protein S2 signature 113 130 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 PRINTS Ribosomal protein S2 signature 88 105 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 SUPERFAMILY Ribosomal protein S2 29 181 IPR023591 -
Bach13g00560 183 ProSitePatterns Ribosomal protein S2 signature 2. 113 137 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bach13g00560 183 PANTHER 40S RIBOSOMAL PROTEIN SA 31 181 IPR005707 GO:0003735|GO:0006412|GO:0015935
Bach13g00560 183 Gene3D - 18 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00560 Bach-Chr13 10937599 10938782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00560 30 181 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 77.124 1.47e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00560 K02998 - gmx:548014 240.736