Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00488 ATGTCTAAGAGGGGTAATTGCAAGTTCTTTGCCCGTGGATCGTGCTGGAAAGGGGAGCAATGTGAATATTCTCACGCCAGAACAGATCCCCCAGTTGATGTTTGCACATTCTATCAGAAAGGACTTTGTGCTTATGGTAGTCAATGCAGATATAAACACATCAAAGCTTCTCAAGCACAATTTTCAGCATCATCATCAGCAAATAGAAACAAATCTCTGGCTTCAGATTCTGTTGTAGCCCATACTACAAGAGGCGTATCTAGTTTGGCTCAAAAGTTTACAAAATCTCTTCCCTCTGACAAATCTACAAGGAGTCTAGAACATAAGCACTGGAATTCTTCAGTGAATGGTGATGCTGGTGAATCCAGTACTGCTGTACCATCTGAGCATTCCTTTTGCATGTTTCCTGCTGCCAACTGCCCCTTAGAAGATAAATGTTATCGTATCCATGGAGACCAGTGCCTATACTGTAAAAAGTATTGCTTGCATCCTACTCAACATTACGAGAGAGAAAAACATTTGCAGACTTGTGTGAAAAAGGAAAAATACCTTCAGGCTTTGAAAGACAGTCAAGAAATAGAATGCAATGTTTGCCTAGAGCGTGTTCTTTCAAAGCCTAGAGCAGCTGAACGAAAGTTTGGATTATTTCCTGAATGCGACCATGCTTTCTGTATATCCTGCATCAGGAATTGGCGCAGTAGTGCAACTAATGCCCCAACTCCTGGAATGGATCTTACTCGTACAGTGAGGGCCTGCCCAGTGTGCCGCAAGCAATCATATTTTGTCATTCCAAGTCCTAAATGGTATTCTACAAAGGAAGAAAAGCAAGAAATTATTGAAAACTACATGGCAAAGTGCAAGTTGATTGATTGCAAGCATTTTGACTCTGGAAATGGGAACTGTCCTTTTGGAACAAGTTGTTTCTACAAGCATACTGTGAAGCCTGGCTCATACACATGGATACACCATAGGCCACCTCCACGAAGAAGAGGAAACAGGTTTAGTAAGTATGACACGTTGGATATGCTCAATGAATTTGATTTAGAAGGTGAAGAGTACTATTCCTTCACGCGGGATTCAGAATTTTTCAATGACATGGATCCATTGGAGCTGATAGCTTTATCAGACATGCTGAGTTCTGGTTCAGGACCAGGGCCTTTTGGACATGATGATGAAGACGAAGATTCTGACGATGAAAACATTTTTCGGATGGCTGCTTTATCAGAAGCGTTGGTGGATGCTGGTATTGATGATTTTTATCCAGAAGAATCAGACGATGAAGAAATGAATCCCATGGAGGCAGCATTAATATCAATGATGCTGTCTAATGTTGCAGAAGAAATGCGTAACCGGGCGGACTTATAGTTTTACCCTAGTCAAATGCTTCCGGGCCCATCTTCTGCCATCTTTTGGAGTTGTTCCTTTTGGCAGTATGAAACCTATCGTCTATTTTGGAAAAACTATTGGGTAGTAACTGAAGTTTTTCAATCTGGTTTGTGGATAGGTTAAGACTCTATTCTCTATAGTTGTTTCTGGGTTTGGATATACTGCATTGTATATGCGTTGCTGTCTATTTGAGGATTATTATTATTATTATTCATTTGATTAGAGAAAGTCTCTGATTCCTTCGGTTTAGTATCA 1641 0.4059 MSKRGNCKFFARGSCWKGEQCEYSHARTDPPVDVCTFYQKGLCAYGSQCRYKHIKASQAQFSASSSANRNKSLASDSVVAHTTRGVSSLAQKFTKSLPSDKSTRSLEHKHWNSSVNGDAGESSTAVPSEHSFCMFPAANCPLEDKCYRIHGDQCLYCKKYCLHPTQHYEREKHLQTCVKKEKYLQALKDSQEIECNVCLERVLSKPRAAERKFGLFPECDHAFCISCIRNWRSSATNAPTPGMDLTRTVRACPVCRKQSYFVIPSPKWYSTKEEKQEIIENYMAKCKLIDCKHFDSGNGNCPFGTSCFYKHTVKPGSYTWIHHRPPPRRRGNRFSKYDTLDMLNEFDLEGEEYYSFTRDSEFFNDMDPLELIALSDMLSSGSGPGPFGHDDEDEDSDDENIFRMAALSEALVDAGIDDFYPEESDDEEMNPMEAALISMMLSNVAEEMRNRADL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00488 454 Gene3D - 1 69 - -
Bach13g00488 454 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Bach13g00488 454 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Bach13g00488 454 SMART c3hfinal6 128 152 IPR000571 GO:0046872
Bach13g00488 454 SMART c3hfinal6 285 313 IPR000571 GO:0046872
Bach13g00488 454 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Bach13g00488 454 SMART c3hfinal6 3 27 IPR000571 GO:0046872
Bach13g00488 454 SMART ring_2 195 255 IPR001841 -
Bach13g00488 454 MobiDBLite consensus disorder prediction 109 123 - -
Bach13g00488 454 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 25 IPR000571 GO:0046872
Bach13g00488 454 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Bach13g00488 454 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Bach13g00488 454 SUPERFAMILY CCCH zinc finger 5 26 IPR036855 GO:0046872
Bach13g00488 454 PANTHER MAKORIN-RELATED 6 350 IPR045072 GO:0000209|GO:0061630
Bach13g00488 454 SUPERFAMILY CCCH zinc finger 31 53 IPR036855 GO:0046872
Bach13g00488 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 290 IPR013083 -
Bach13g00488 454 Pfam Zinc finger, C3HC4 type (RING finger) 195 255 IPR018957 GO:0046872
Bach13g00488 454 ProSiteProfiles Zinc finger RING-type profile. 195 256 IPR001841 -
Bach13g00488 454 CDD RING-HC_MKRN 193 256 - -
Bach13g00488 454 ProSiteProfiles Zinc finger C3H1-type profile. 285 314 IPR000571 GO:0046872
Bach13g00488 454 MobiDBLite consensus disorder prediction 98 123 - -
Bach13g00488 454 SUPERFAMILY RING/U-box 185 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00488 Bach-Chr13 10161630 10164938 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bach13g00488 zf-C3HC4 4.3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00488 K15687 - gmx:100788886 570.081