Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00476 ATGAACCAAAGTTTCCTGCGAATTCATCTCCTGCTTCGAATCCCAGAGCTCATACGATTTCAGGAGAGATTCACATACCCAAATGGTAAACTCAGCTTGATCACACTGAAATCATTTCTGGGCTTATCTGAGAAGAGGTTGTTTGATTCCTGGGAAAACTGGTGTACGATGCCTGAAAAACCTGAAATTGAAGATTGGCGAGGCGGGCAGATTCAGTTGCAGCCTGCAGTTTACTCTCAGCCATGGTGGCATGGAGTGGGGGCAGGTGTTTGCTTTGGTGATAGTGCTTCCAAAGTATCTTCAGCTGAAACCCACAGTGGTTCTACTTTGAATGGTGCCAAGCGGTCAGAAGGCAATGAAGGGCTACCTGTTGGAGTTAGTTTTAATAAGCAGGCTCAGCTTATAGCTTCACAGACTGGAACTGATGGGGATGTTGGCAAAGAGCACCAACACATTAAACATATTCAGTCCTCAGCACCATTTACCGTGGGCAAACACCTGGGTCCAAATTCCCAGAAGGAACTTATTGGTCATTCAATTGTCTTAACATCTTATCCTTATTCAGATGCACAGTATGGTCGAATCTTGACTCCTTATGGACCTCAAACTACGATAAATCATCATCTGTATGGAATTAATCATTCTAGAATGCCTTTGCCGCTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCCAAACAGTATCATGGCATTCTGAGGCGAAGACAGTCACGGGCCAAGGCTGAGCTTGAAAAGAAAGCGATTAAAGTTAGAAAGCCATATCTTCATGAATCTCGCCACCAACATGCTATGAGAAGGGCAAGAGGATGTGGGGGTCGCTTTCTCAATTCAAAGAAGCTTGAAAGTAACAATTCCAATGTCACTTCAGAAGGCAGCGAGAATACTGGTGCAAATCCCTCAACAACATCTGAGAGCTCACCTGCCTCTGAACGTTTGCTTACTAACAATAAGAACTTAGGCTCATTAAATGATCAGCTAGATGCATCGGCATCAATAGTTCAGAGCGCGCACAAAGCACATGGTCTCTCCATTGGTTACGGTAATGGTAATGGTCTGTCATCAATGTACCACACACCATTAGGTGGGAAAAGGGATGGAGACTGCTCCTTTCAAGAGAGGGAAAGCGTGCAAGTGCGCAGAACCCCAAATGGGGCTGTTCAGTAA 1185 0.4489 MNQSFLRIHLLLRIPELIRFQERFTYPNGKLSLITLKSFLGLSEKRLFDSWENWCTMPEKPEIEDWRGGQIQLQPAVYSQPWWHGVGAGVCFGDSASKVSSAETHSGSTLNGAKRSEGNEGLPVGVSFNKQAQLIASQTGTDGDVGKEHQHIKHIQSSAPFTVGKHLGPNSQKELIGHSIVLTSYPYSDAQYGRILTPYGPQTTINHHLYGINHSRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNSKKLESNNSNVTSEGSENTGANPSTTSESSPASERLLTNNKNLGSLNDQLDASASIVQSAHKAHGLSIGYGNGNGLSSMYHTPLGGKRDGDCSFQERESVQVRRTPNGAVQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00476 394 MobiDBLite consensus disorder prediction 284 316 - -
Bach13g00476 394 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 226 281 IPR001289 GO:0003700|GO:0006355
Bach13g00476 394 SMART cbf3 223 284 IPR001289 GO:0003700|GO:0006355
Bach13g00476 394 PRINTS CCAAT-binding transcription factor subunit B signature 227 249 IPR001289 GO:0003700|GO:0006355
Bach13g00476 394 PRINTS CCAAT-binding transcription factor subunit B signature 258 281 IPR001289 GO:0003700|GO:0006355
Bach13g00476 394 Gene3D - 224 285 - -
Bach13g00476 394 ProSiteProfiles NF-YA/HAP2 family profile. 224 284 IPR001289 GO:0003700|GO:0006355
Bach13g00476 394 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 114 336 IPR001289 GO:0003700|GO:0006355
Bach13g00476 394 MobiDBLite consensus disorder prediction 278 316 - -
Bach13g00476 394 ProSitePatterns NF-YA/HAP2 subunit signature. 229 249 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00476 Bach-Chr13 10026899 10031394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00476 74 289 CCAAT-HAP2 Transcription Factor Family AT5G12840 40.359 1.35e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bach13g00476 CBFB_NFYA 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00476 K08064 - qsa:O6P43_029546 357.451