Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00449 ATGGGTCGGGGAAAGATTGAGATCAAAAGGATTGAGAATGCAAATAGCAGGCAAGTTACATTCTCTAAGAGGCGAACTGGGCTGCTTAAGAAGGCACAGGAATTGGCTATTCTGTGCGATGCTGAGGTTGCTGTCATCATCTTTTCCAATACGGGCAAACTCTTTGAGTTTTCAAGTTCTGGCATGAAGCGAACACTTGCAAGATACAACAAATGCATAGAATCCCCAGAGGGTGCTTTAGCGGAGTATAAGACAGAGAAGGAAGAGTCTAAGGTAGTGGGAATTCTCAAAGACGAAATTGCAATGCTACAAACAAAGCAGTTACAGTTGATGGGTAAGGACCTCACAGGCTTGGGCTTAAAAGAGTTGCAACATCTAGAGCAGCAACTCAGTGAAGGGTTATTGTCAGTCAAGGAGAGGAAGGAGGAAGTGCTTATGGAGCAATTAGAGCAGTCTAGAGTTCAGGTTGAGGAGCTTCGTTGTTTGTTCCCTCTAACAGAACATGTGGTTCCATCTTACCTTGAACACCAACATATGGAAAGAAAGAAAGCCTTTGTAAATAATGGGGTCACATGTCCTAACTTGGCTAGTGATCCTTCAAATGAGAAAGATTCAGACACCACACTGCATTTAGGGTTGCCGATTGATGTCCAGCACAAAAGGATGGCACCTGAGAAAGAAACTTTTTCCAGAACCTCGCAGGGTCCAATGGCTCTACTCTGA 723 0.4412 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLARYNKCIESPEGALAEYKTEKEESKVVGILKDEIAMLQTKQLQLMGKDLTGLGLKELQHLEQQLSEGLLSVKERKEEVLMEQLEQSRVQVEELRCLFPLTEHVVPSYLEHQHMERKKAFVNNGVTCPNLASDPSNEKDSDTTLHLGLPIDVQHKRMAPEKETFSRTSQGPMALL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00449 240 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach13g00449 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach13g00449 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach13g00449 240 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Bach13g00449 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach13g00449 240 MobiDBLite consensus disorder prediction 215 240 - -
Bach13g00449 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Bach13g00449 240 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bach13g00449 240 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Bach13g00449 240 FunFam MADS-box transcription factor MADS-MC 13 89 - -
Bach13g00449 240 Pfam K-box region 89 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach13g00449 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach13g00449 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach13g00449 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach13g00449 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00449 Bach-Chr13 9714993 9719460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00449 1 221 MADS-box Gene Family AT5G13790 52.766 2.18e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach13g00449 K-box 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00449 - - zju:107417456 324.324