Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00393 ATGGACGAATCCTTCTCCGACCACAAGCTTTCCGGTTTCCTATGCGCGGTTCTTACAATTACTCCGAACCAATGCGGTCCTTGGGCAAATATAGGTTTCAAGGAGCGGTGCAACATCTTTGGGGACGGTTCCAAGGTCGGGTTCCGGTCTGAAACCGGTGTTGTCTTAACTCCGGTGGACTTGGTGTCGAATCTGATTGATAATGGGGACGTATCTCCTTCTAATTCAGAACAATGCAAAGCTGTGGAGGGGGATTCTATGGTTCATTCCAATTGTAATAGTGGGGTTTCGGCAATGGATGGATTTGTGGGGAGGAAAAGTGATGGGGTGAGTGAAGGTGGGAGCTCAAGGAAGAGGAGTCTGAGGAAGATTGGGATGGTGAATGGGAGTATTAGTGTGGTTAATCAGCTTCACGCTCTGGTTAGCCGCAAGTGTTTGAAGATTGATACTCGAGCGCTTTGGGTTGAGCTTGGTGGTGGTGGAGAGGCAAGGGCGGTGGTGTTAGTTGATGTTTACCTTCCTGTTGCATTGTGGAGTGGCTGGCAGTTTCCGAGATCCGCGTCGATTGCCGGTATTCTTTCTGGGCATTTGAGCTGCAATTGGGGTAAGAGAAGTTCAATGCTTTCATGTTCAGACTATTCTAGGAAGATTCTGGGAGATAAAGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAATCTCCATCACCTTGTGAGTGATTCTTCAAAGAAAAGGCTATTTGAACTACATGAAATTTTTAAGAAGGTACCTTGTGTAGGAAAGCAATACAAGTCTGATAGTTGCAAGATTATACCCTTGGCTGACTCTAGCAGATCTGGTATTGGGGAGATATCTGATGACATTTTAACTAGAATTATAGCTTCTCTTGCCCCAGTGGACCTCGCTAGGGTTGCTGCAACCTGTCGCCATTTAAGATCCTTGGCTGCTTCTGTAATGCCTTGTGCAAAGTTAAAACTGTTTCCCCATCAGCAGGTAGCAGTTGAGTGGATGTTGCATCGAGAGAGAAATGCTAAGGCATTGCTTCATCCTTTATATGTTGCTCTCTCAACTGAGGATGGCTTTAGTTTACATGTAAATACTGTATCTGGTGAAATTGTCACCGGGGAAGCTCCTACCATAAAAGATTTTTGTGGTGGAATGTTCTGTGATGAACCTGGCCTGGGTAAGACTGTAACTTTGCTTTCCCTTATTCTGAAGACACAAGGTGCATTGGCTGACCCACCAGATGGGGCACTAGTAACTTGGTGTCAGCATAATGGTGATCAGAAATGTGGCTATTATGAGCTTAATGGTAACAGCAGCTCTGGTAGTAGCATGTTGGGGAAGAGGGATGCATGGAAGGATGATTGTAGAAATAATGGGAATGATGAATACTCCTTGAAAAGAGCCAAGTTGATGGCTACTGACAAGCAAATTACTGCATTTCATTATTCACATGCCAGCAAAGAAAAGAGATCACCTGTGGGTGCATGCTCTGAGCAACCTATGCCTGCAAGTCGATTCTCTAGGAGCTTCAGTCGGATTAAAAGAGATCTACATTTCTCCTATGAGCAGGTAGCTTTCTTTTCCAATGAAAGAAAAGTAGGTGAAAACTCAAGTGAAACAAAGCATGCATCAGATGCTGTATCACATTTATCTCAAAACAAGTTAGTTGATACCTCATATGGACATGGAAAGGACAGGAGTGATGGGCAGCCTACAACAGATTGTGTTGAGCCTAATGATACCTGGATTCAGTGTGATGCTTGTCACAAGTGGCGGAAGCTTACAGATTCAAATACAGCTAATATTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTGTATCAGAATTGTTGTATACCTGAACAATCTTGGCAGAATGGCTGTCAAATAACTAACTTACAAGGATTTCACTTGAAAGGAACTGCTGGTGGTCTGAAACAAAATGTTTCATTTTTCATTGGTATACTTAAGGAGCACTGTGCATTGAAAAATTCTCAAACAAAGAAAGCCCTTACTTGGTTAGCTGGACTTTCTACAGAGAAACTTGTCTATATGGAAACAATTGGCTTACGGGGTCCACTTTTAGGTACCTATAATATGTCTAGTGAATATGCATTCCACAAAATATTTCAGGCATTTGGCCTCATAAAACGAGTAGAGAAAGGTGTATGTAGGTGGTACTACCCACCAAATCTTAATAATTTGGCTTTTGATGTTTCTGCTCTAAGAATTGCTCTCTGTGAGCCATTAGATTTTGTTAGGCTATACTTGTCAAGAGCAACCCTTGTAGTTGTTCCTTCAAACTTGGTTGATCACTGGAAAGCACAAATTGAAAAGCATGTCAAACATGAACAATTGAGAGTTTATGTTTGGGTTGATCATCAAAAGCCATCTGCGCATAATCTGGCTTGGGACTATGATGTTGTCATTACTACATTTAATCGATTGAGTGCAGAGTGGAACCTGCGTAAGAGAAGTGTTCTGATGCAAGTACATTGGCTTAGGATCGTTTTGGATGAAGGGCACACTCTTGGCTCAAGTGTGAGCTTGACAAACAAGTTGCAAATGGCTATTTCATTGACGGCATCAAATCGTTGGATATTAACAGGAACACCAACACCTAACACTCCTAACAGTCAATTATCACATCTGCAACCGCTGCTAAAGTTTCTTCATGAAGAAGCTTATGGACAGAATCAAAAGTCATGGGAAGCTGGCATTCTTAAGCCATTTGATGCTGAGATGGAGGAAGGAAGGTCTCGCCTATTGCAGTTGCTTGAAAAATGCATGATTAGTGCAAGAAAGATAGATTTGCAAAATATCCCACCATGCATCAAGAAAACTGTTCTTCTAGATTTTACTGAGGAGCATGCCAGAAGTTACAATGAATTGGTACTCACGGTTAGGCGAAACATATTATTGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTAAATCCAAAACAGTGGAAAACCCGGAGTGCAACTATTAAAAATGTTAGGCTCTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGTGAAGATATTCAAGAAACTATGGACATGTTAGTAGAAAGCAGTTTGGGTCCTGTTTCTGGAGAGTATAATACAATAAGATACAATCTTATTTTTGGTGGCCACTGTGTCAGGTGCAAGGAATGGTGCCGTCTCCCTTTCATTACACCTTGCCGGCATCTGTTATGCCTTGATTGTGTTGCTTTAGACAGTACGAAGTGTACTTTTCCTGGCTGTGGTAATTTATACGAGATGCAGAGTCCTGATCCGCTAGCCCGTCCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAACTACAACCTTCATATAAACAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTTTCATATCTTGTACAGAGATTGAAAGCTTTGCAGGAAACCAATAAAGAGAGGGGTTACCATATGGATAATGGCAATGATCAGAATGATGCTGCGAAGAGTTGCCCTCTGCAGACGAGAGATACTGAATCATCACACTGGGAATCCCATATGATCAGCACCAAAAGAAATGTGGCCCCAGAGAAAGTTTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTTTTGCCGGTATCAAATATGCTGGGATGTATAGCCCTATGCATTCTAGTATCAAGAAGAAGGCACTAGCCACGTTCCAGCATAATTCAAGTTGTTTGGCACTCGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACACGTGTTTCTAATGGAACCTATCTGGGACAGAAGCATGGAGGAACAAGTAATTAGTCGTGCTCATCGCATGGGTGCTTCTCGTCCTGTTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAAATTTTTTACAGGATGCTGATAAATGTAGAAGATTCCCAAGTAAAGATGTCAAATCTGAAGATGAGGGGGGACGAGGATATCGTTCATTGCATGATTTTGCTGAAAGCAGTTATCTGCAGGAACTTAGATCTGTTCACAATAGCCCCGAAATTGTAGACGGTGCTTAA 4140 0.4208 MDESFSDHKLSGFLCAVLTITPNQCGPWANIGFKERCNIFGDGSKVGFRSETGVVLTPVDLVSNLIDNGDVSPSNSEQCKAVEGDSMVHSNCNSGVSAMDGFVGRKSDGVSEGGSSRKRSLRKIGMVNGSISVVNQLHALVSRKCLKIDTRALWVELGGGGEARAVVLVDVYLPVALWSGWQFPRSASIAGILSGHLSCNWGKRSSMLSCSDYSRKILGDKESIWNLSDCHVLGCNLHHLVSDSSKKRLFELHEIFKKVPCVGKQYKSDSCKIIPLADSSRSGIGEISDDILTRIIASLAPVDLARVAATCRHLRSLAASVMPCAKLKLFPHQQVAVEWMLHRERNAKALLHPLYVALSTEDGFSLHVNTVSGEIVTGEAPTIKDFCGGMFCDEPGLGKTVTLLSLILKTQGALADPPDGALVTWCQHNGDQKCGYYELNGNSSSGSSMLGKRDAWKDDCRNNGNDEYSLKRAKLMATDKQITAFHYSHASKEKRSPVGACSEQPMPASRFSRSFSRIKRDLHFSYEQVAFFSNERKVGENSSETKHASDAVSHLSQNKLVDTSYGHGKDRSDGQPTTDCVEPNDTWIQCDACHKWRKLTDSNTANISAAWFCSMNTDPLYQNCCIPEQSWQNGCQITNLQGFHLKGTAGGLKQNVSFFIGILKEHCALKNSQTKKALTWLAGLSTEKLVYMETIGLRGPLLGTYNMSSEYAFHKIFQAFGLIKRVEKGVCRWYYPPNLNNLAFDVSALRIALCEPLDFVRLYLSRATLVVVPSNLVDHWKAQIEKHVKHEQLRVYVWVDHQKPSAHNLAWDYDVVITTFNRLSAEWNLRKRSVLMQVHWLRIVLDEGHTLGSSVSLTNKLQMAISLTASNRWILTGTPTPNTPNSQLSHLQPLLKFLHEEAYGQNQKSWEAGILKPFDAEMEEGRSRLLQLLEKCMISARKIDLQNIPPCIKKTVLLDFTEEHARSYNELVLTVRRNILLADWNDPSHVESLLNPKQWKTRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVESSLGPVSGEYNTIRYNLIFGGHCVRCKEWCRLPFITPCRHLLCLDCVALDSTKCTFPGCGNLYEMQSPDPLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALQETNKERGYHMDNGNDQNDAAKSCPLQTRDTESSHWESHMISTKRNVAPEKVLIFSQFLEHIHVIEQQLTFAGIKYAGMYSPMHSSIKKKALATFQHNSSCLALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPVHVETLAMRGTIEEQMLNFLQDADKCRRFPSKDVKSEDEGGRGYRSLHDFAESSYLQELRSVHNSPEIVDGA 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00393 1379 Gene3D - 751 941 IPR038718 -
Bach13g00393 1379 SUPERFAMILY F-box domain 279 320 IPR036047 GO:0005515
Bach13g00393 1379 ProSiteProfiles Zinc finger CW-type profile. 581 632 IPR011124 GO:0008270
Bach13g00393 1379 Gene3D - 572 634 - -
Bach13g00393 1379 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1193 1342 IPR001650 -
Bach13g00393 1379 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 732 897 IPR014001 -
Bach13g00393 1379 SMART ultradead3 325 908 IPR014001 -
Bach13g00393 1379 Gene3D - 1119 1371 IPR027417 -
Bach13g00393 1379 Pfam SNF2-related domain 332 996 IPR000330 GO:0005524|GO:0140658
Bach13g00393 1379 CDD SF2_C_SNF 1208 1313 - -
Bach13g00393 1379 SMART helicmild6 1221 1303 IPR001650 -
Bach13g00393 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1329 IPR027417 -
Bach13g00393 1379 CDD DEXDc_SHPRH-like 761 938 - -
Bach13g00393 1379 CDD F-box_SF 286 318 - -
Bach13g00393 1379 Pfam CW-type Zinc Finger 586 629 IPR011124 GO:0008270
Bach13g00393 1379 Pfam Helicase conserved C-terminal domain 1202 1303 IPR001650 -
Bach13g00393 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 410 IPR027417 -
Bach13g00393 1379 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 195 1328 - -
Bach13g00393 1379 CDD RING-HC 1059 1084 - -
Bach13g00393 1379 ProSitePatterns Zinc finger RING-type signature. 1075 1084 IPR017907 -
Bach13g00393 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 937 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00393 767 1323 RAD5 or RAD16-like Gene Family AT5G22750 24.872 3.21e-37 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach13g00393 SNF2_N 2.3e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00393 - - pcin:129315314 1896.32