Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00365 CTGAGCTCTGCTTCAAAACCCTTCTTTGTTCGATTCGATCCGAGAATACGTCGTGAGTTCATGTACTGGATCTGCTACTGAGTGTGAGCTAAGGAAGAGATCAGAGGCATATTTGTTGGTGTGATCTGAGTCTGTACTGGATCAACTAGGGTTTACATGAGTTCACCGGCAGAGGTGAAGATGGAAGAAGGAAAGCCTTCAGTGAGCTCAGCCAACAGTTCACATGTTGATGAAGAACATGCGGACCCTACTGAGTCTAGATTCATTGAGTTCTGCAAGAATGGACTACCATTGGATGAGGAAAGTTTTAGACGAGCAAAGAAACTGTTCAAAGAAACCAAATCGGTTCTACTGGCAAATATCTCATCTATTGGGAATGGGACGTGTGAAGAAGCAGAACGGTATTGGTTTTCATTTGTTCTATACTTGGTCAAGAGGTTGGTGGAGAAGAACACAGATGGTGGAAAGGAAGAGACTGATAACAACAGACTTACCTTTTGCCAAATGTTGAGAGCGGCAAAGCTTAACATCTCAGATTTTTTTAAAGAACTTCATCAATTTGTTGATAAGGCTGGCTCAATTATAAGCAACCTATATGGCACCGATTGGGAAAACAGGCTCAAGGCGAAGGAGTTGCAGGCCAATATTTATCACTTGCGCATTCTTAGCAGTAAATATAAACGTGCATTTGGGGATTTATTCTTGACAACTGATGCAAATGTTGAGCAGTCAGCTGCTCCCAAAGCCACTGATTATGTATCTGAATACCATCGTTTTGGATGGCTACTCTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTTAAAGACTTGGTGACATGCACTACTGGTTTAGTTTCTATATTGGCCATCTTGATCATTCATGTTCCTGTTCGGTTTCGGAATTTTAACATTAATGACTCTCCACTCTTTGTCAAAAGAAGTACAAGAGGTGTGGACCTCATTGCATCTCTTTGTCAAATTTATGAAACTACAGAAGATGAATTGAGAAAAACAATAGAGAAGACCAACAAATTAGTTGCAGATATATTGAAGAAGAAGCCTTGTTGGGCATCTGAATGTGAAACTGAGAACCTGGAGAATATTGATAGAGATGGTTTGATTTATTTTAGAGATCTAATGGAGGAAACATGTCTGCAATCTAATTTGGATATCTTAGAAAAAGATTATGATAATGCACTTCATGACAAGGGTGAACTGGATGAGAGGTTGTTCATTAATGAGGATGATAGCTTATTAGTTTCAGGAAGCTCATCCGGAGGTTCTATGCCTATAAATGGTGTTAAGAGGAAATTTGATTCACTGGCATCTCCTACAAAGACAATTACAAGCCCACTCTCTCCCCACCGCTCTCCTGCATCTCATGCAAATGGCATTATGGGTAGTGCAAATTCAATGATGGCAGCCACCCCTATTAGCACTGCTATGACTACTGCAAAGTGGCTTCGTACTGTCATATCTCCACTTCCATCAAAGCCCTCGCAAGAGCTGGAGAGGTTCTTCACATCATGTGATAGGGATGTTACTGGAGATGTGGTGCGCAGGGAACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTGGGAGAACGGTGTGCAACTGTAAGCCTACAAACTACAAACCTCATGGACGATGTCTGGGCAGAGCAGCGAAGACTGGAAGCTCTGAAGTTATATTACAGGGTATTGGAAGCAATGTGTAGAGCAGAAGCCCAGAAACATGCAACGAATTTAACCTCGCTATTAACCAATGAGAGGTTCCATAGATGTATGCTTGCATGTTCTGCAGAATTGGTCCTGGCAACACATAAAACTGTAACAATGTTGTTTCCTGCAGTATTGGAGAGGACTGGAATCACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTTATAAGACATGAGGATTCTCTCCCAAGAGAATTAAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCGATGTATAATTCTTTGACAGTTGCAAGACACGCCCTCTCTGCAGAAATAAATCGTCTTGGATTATTAGCTGAACCAATGCCATCACTGGATGCAATTGAAATGCATATCAAATTCTCCTGTGGAGGGTTTGCCCCTGTGCCTTCCTTGCAGAAGCTTGAAAATTCACCAAGTCAGAATGGGGATTTGAGGTCTCCAAAGCGACTCTGCACTGAATATCGAAATGTGCTAGCAGAACGGAATTCCTTTACCTCACCAGTTAAGGATCGGCTTCTGCCCTTCAGTAATGTTAAGTCAAAGCTACCCCCTCCTCCTTTGCAGTCAGCCTTTGCAAGTCCTACTAGACCAAATCCAGGAGGTGGAGGGGAAACTTGTGCTGAAACTGGAATCAATATATTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCCGAGTAAGTGGCATGGTTGAAAGGCTGCAATTGTCTCAGCAGATAAGAGAGAATGTATACTGTCTTTTCCAACAAATCTTAAATCAACGGACATCTCTCTTCTTTAACCGTCATATTGACCAAATCATCCTATGTTGTTTCTATGGTGTTGCAAAGATTTCTCAACTGAGCCTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATCCGCACGACGTAATGGGAGAACAGGGCAGGAGCATGTTGATATCATCACATTTTACAATGAAATATTCATTCCCTCTGTGAAGCCTCTTCTGGTTGAGCTTGGCCCTGGGGGGACAACTACAAGATGTAACCGGACACCTGAAGTCAACAATAAAAATGATGGGCATGTAGCTCAGTGTCCTGGATCTCCTAAAATATCTCCTTTTCCAAGCCTTCCTGATATGTCTCCAAAAAAAGTTTCCGCGGTACATAATGTGTATGTCTCTCCATTGCGGTCATCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGTTACTATGCATGTGTTGGGGAGAGCACTCATGCATATCAAAGCCCTTCGAAAGACCTGACTGCCATCAATAACCGTTTGAATAGCAACAGAAAGGTCAGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTGGCAAACAGCCTTTATCTTCAGAATGGCAGTTGTGCATCGTCATCAGGTCCACCATTGAAGTCTGAGCAACCTGACTCTTAA 3252 0.421 MSSPAEVKMEEGKPSVSSANSSHVDEEHADPTESRFIEFCKNGLPLDEESFRRAKKLFKETKSVLLANISSIGNGTCEEAERYWFSFVLYLVKRLVEKNTDGGKEETDNNRLTFCQMLRAAKLNISDFFKELHQFVDKAGSIISNLYGTDWENRLKAKELQANIYHLRILSSKYKRAFGDLFLTTDANVEQSAAPKATDYVSEYHRFGWLLFLALRVHAFSRFKDLVTCTTGLVSILAILIIHVPVRFRNFNINDSPLFVKRSTRGVDLIASLCQIYETTEDELRKTIEKTNKLVADILKKKPCWASECETENLENIDRDGLIYFRDLMEETCLQSNLDILEKDYDNALHDKGELDERLFINEDDSLLVSGSSSGGSMPINGVKRKFDSLASPTKTITSPLSPHRSPASHANGIMGSANSMMAATPISTAMTTAKWLRTVISPLPSKPSQELERFFTSCDRDVTGDVVRREQIILQAIFPSSPLGERCATVSLQTTNLMDDVWAEQRRLEALKLYYRVLEAMCRAEAQKHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARHALSAEINRLGLLAEPMPSLDAIEMHIKFSCGGFAPVPSLQKLENSPSQNGDLRSPKRLCTEYRNVLAERNSFTSPVKDRLLPFSNVKSKLPPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRVSGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGRTGQEHVDIITFYNEIFIPSVKPLLVELGPGGTTTRCNRTPEVNNKNDGHVAQCPGSPKISPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGPPLKSEQPDS 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00365 1031 Gene3D - 428 615 - -
Bach13g00365 1031 Pfam Retinoblastoma-associated protein A domain 425 625 IPR002720 GO:0005634|GO:0051726
Bach13g00365 1031 SUPERFAMILY Cyclin-like 747 919 IPR036915 -
Bach13g00365 1031 SMART RB_A_2 425 625 IPR002720 GO:0005634|GO:0051726
Bach13g00365 1031 Coils Coil 338 358 - -
Bach13g00365 1031 Gene3D - 707 901 - -
Bach13g00365 1031 FunFam Retinoblastoma-related protein 1 428 615 - -
Bach13g00365 1031 SMART DUF3452_2 96 243 IPR024599 -
Bach13g00365 1031 Pfam Retinoblastoma-associated protein B domain 749 876 IPR002719 GO:0005634|GO:0051726
Bach13g00365 1031 MobiDBLite consensus disorder prediction 1 31 - -
Bach13g00365 1031 FunFam Retinoblastoma-related protein 1 204 362 - -
Bach13g00365 1031 CDD CYCLIN_AtRBR_like 749 880 - -
Bach13g00365 1031 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 30 1029 IPR028309 GO:0006357|GO:0051726
Bach13g00365 1031 Pfam Domain of unknown function (DUF3452) 106 243 IPR024599 -
Bach13g00365 1031 SUPERFAMILY Cyclin-like 433 627 IPR036915 -
Bach13g00365 1031 Gene3D - 204 362 - -
Bach13g00365 1031 FunFam Retinoblastoma-related protein 1 699 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00365 Bach-Chr13 8652814 8661089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00365 9 1031 Core Cell Cycle Gene Families AT3G12280 69.477 0.0 1401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Bach13g00365 RB_A 8.7e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00365 K04681 - qsa:O6P43_029726 1669.83