LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach13g00315	ATGAAGAGGTCTATTCCTCCTCCTCCTTGTTATTCCCCTTCTTCTTCATCATCATCGACTTTCTCTGTTGTTGAGAATCCTCACCAACCGAGCCAAACAAGGCCTAAGCGTGCAAGGAGGAATCTGAAGCCTGAGAAATCAGTGAAGAACGGAGGTGATGACTCCAGCTCTGGCAGAAGGAGCTCCATTTACAGAGGAGTTACCAGGCATAGATGGACAGGGAGATATGAAGCTCATCTCTGGGACAAGACTTGCTGGAACAAAATGCAGAACAAAAAAGGAAGACAAGGTAATTTTCTTGGTGCATATGATAGTGAAGAGGCTGCAGCTCGCACCTATGATCTTGCTGCTCTCAAGTATTGGGGACCGGATACAACCTTGAATTTTCCAAAAGATGGATATACCAAGGAACTTGAGGAGATGGAAAAGGTGTCAAAGGAAGAATATTTGGCTTCTTTGAGGCGACAAAGCAGTGGGTTTTCTAGAGGGGTTTCCAAATATCGCGGTGTAGCCAGGCATCACCATAATGGCCGATGGGAAGCCAGGATTGGAAGAGTCTATGGGAACAAGTACGTTTACTTGGGTACTTTCAATACTCAAGAAGAGGCTGCTGCTGCGTATGATATTGCAGCAATAGAGTATAAAGGTATAAATGCAGTGACCAATTTTGACATAAGCAACTACATTCACATAATAATGAAGAAAAACTTGGAACCACCACAACAAAGGCAAGCCCAGAAAGTTCCCAGAATAATGAAGAGAAAAATGGACCAAAACCAAACCCAAGAAACACAAACAGATTCCAAAACAGCGAATCCAATCTACCAAACCCAAGAAACAGAGATCCAGGATTCACAAACAGTTCCAAACATTTCCTCCTCTGAATCAGAAGCAGAAAAAGCAGTACTTGAATTTCAATTTCAGTCACCCAAAACAGAGTCTACCCAGATTCCTCTTTCTGCCGAAGTTTCATCAATGGCCGTGATGGAGCCTGTGATGGAACAAGAGCTTCAATGGAGCTTTTTGGATTCTGAGCTCTCTCAATTTCAAGTCCCAGAGCTGCCTCTAGCTAAAACAGAGTCTTTTCAGGGTATAATAGATGATGCAGGGTTTGAGGAGGACATTGATTTTCTATTCCAAGGAGAACCTGAAGAAAAAGATTTCAGTTTGAAGGCAATCTTGGAAAATTCAAGCTTCGGAGACACTTTTGATGCAGCAACAAGCATGGTGGATAATGGGCAGGAAAAATTGTCTTCTGCTTCTTCTTCTTATTCTTCTTCTTTGTCTTCTTCTGCCGCTGCTTCTGCTTCTTCACCTTCTTCTTCAACAACTTCAAATTTCTTGTAA	1347	0.4254	MKRSIPPPPCYSPSSSSSSTFSVVENPHQPSQTRPKRARRNLKPEKSVKNGGDDSSSGRRSSIYRGVTRHRWTGRYEAHLWDKTCWNKMQNKKGRQGNFLGAYDSEEAAARTYDLAALKYWGPDTTLNFPKDGYTKELEEMEKVSKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYVYLGTFNTQEEAAAAYDIAAIEYKGINAVTNFDISNYIHIIMKKNLEPPQQRQAQKVPRIMKRKMDQNQTQETQTDSKTANPIYQTQETEIQDSQTVPNISSSESEAEKAVLEFQFQSPKTESTQIPLSAEVSSMAVMEPVMEQELQWSFLDSELSQFQVPELPLAKTESFQGIIDDAGFEEDIDFLFQGEPEEKDFSLKAILENSSFGDTFDAATSMVDNGQEKLSSASSSYSSSLSSSAAASASSPSSSTTSNFL	448

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bach13g00315	448	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	35	305	-	-
Bach13g00315	448	MobiDBLite	consensus disorder prediction	14	31	-	-
Bach13g00315	448	FunFam	AP2-like ethylene-responsive transcription factor	165	226	-	-
Bach13g00315	448	CDD	AP2	165	226	IPR001471	GO:0003700\|GO:0006355
Bach13g00315	448	SUPERFAMILY	DNA-binding domain	62	131	IPR016177	GO:0003677
Bach13g00315	448	SMART	rav1_2	63	136	IPR001471	GO:0003700\|GO:0006355
Bach13g00315	448	SMART	rav1_2	166	230	IPR001471	GO:0003700\|GO:0006355
Bach13g00315	448	SUPERFAMILY	DNA-binding domain	165	226	IPR016177	GO:0003677
Bach13g00315	448	MobiDBLite	consensus disorder prediction	414	448	-	-
Bach13g00315	448	CDD	AP2	63	130	IPR001471	GO:0003700\|GO:0006355

Showing 1 to 10 of 18 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach13g00315	Bach-Chr13	7967442	7971632	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach13g00315	44	237	AP2-EREBP Transcription Factor Family	AT5G57390	65.641	1.79e-86	269

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Bach13g00315		AP2	9e-11	CL0081

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach13g00315	-		-	gmx:100789774	379.793

Showing 1 to 1 of 1 entries

Previous1Next