Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00254 ATGGCATCGACGGTTGTAGCAATTTCGGCTGTTTCTACTGTGTTAAGCATTGTAGGTCTTCAATTTTGGACAAAGTTGTCATTAGATAAACTTGAATCGGACGGACTAATAAGCAAGAATTTGACTGATTTGGACAATGCCAACCATGCCATTGAATTTCTCTTGGGATCTTATGCCACCATAGGGCTGCTGGCAAATTTTATAATCAATGTATTCATCCTACTTAATCTTTGTCTCAAGGCTATTTTCTTCTCTGAGTTGTATCCTTCTGAAACTCGGAAACTGGTTGAGCGACTCATCAACTATGTCATTTACAAGGGAACGTTTCTACCACTAATTGTGCCAGCAACAATATATCATGCTGGTCTGTGGTCAGCCTGGCTGATTGTGCTGTGTTCTTTTAAGATGATTCAAGCGTTGGCCAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGCTAGACCCTGGGCATATTTTCGTGTATATTCAGCATTGTTATTTGTTTTTTTGGTTGATGTTTTCTGGATAAGGCTATGTCTGGCTATATATAAAACACTTGGTTCTTCTATGTTATTGTTGCTGTTCTTTGAGCCTTTGAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGGTTCCAGTTGCTTGATATATGGCTTCATCATGCAACGTACACCAGTGCTTATTGCCAAAGATCCAAACTTTTCGATACATTAACTGCAGGGTTGTTATTGGAATGGAAGGGGATTCTTGTTCGGAACTTGGGATTTTTTCTAGACATGGCAACTTTCTTAATGGCACTTGGCCATTACTTGCATATTTGGTGGCTTCATGGCATGGCATTCCACCTTGTAGATGCATTGCTATTTCTAAACATACGTGCATTGCTTAGTGCAATGATAAAACGTGTAAAAGGCTTTATCAGGTTAAGGATAACTCTAGGTGCACTTCATGGAGCTCTTCCTGATGCAACTACTGAGGAGCTACAAGCCTATGATGATGAATGTGCTATCTGTAGGGAACCCATGGCAAAGGCTAAAAGGCTAAACTGCAAACATCTTTTCCATCTTACATGTTTGAGATCTTGGTTGGACCAAGGCCTGGCTGAAATTTATACTTGTCCAACATGTCGGAAGCCACTTTTTGTTGGTCGGCCTGAAAATGAAGCAAACTCTAATACAAGGGAAATATCAAGTGATGAGCGGCTTGCACTTCAAATGAGTGCAGGATTTGATCGGTCAAACTCCGCTAGACATACCATGCCTGCAGGATTATATCCCAATCAGGCACCTAATGCTGTGGGTGCAGGAGCGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGAGTGTTGATGGGGCTGGGCCATCTACTGCTATCAGGTCAGTTGGATTAGGAAGGGTTCAAATGATGATGAGGCATCTTGCGTCTGTTGGAGAAACGTATGCTCAGACTGCTCTTGAAGATACTGCTTGGAACCTTTGGTCCATTAATCCCTCTCAGGCTTCTTCAAGTGGTTCAGCCATTCCCCCTGCTGGTGGAAGATTCCCTGCACGCTCTGGTAGTTTACACGTGAGGACTCCTTCACAGTCTGCAAATGGTGATTTGGCAAATTTACTTGCTATGGCTGAGACAGTCCGGGAGGTTCTTCCTCATATATCAGATGACTTAATTTTCCAGGACTTGCAGCAGACGAATTCAGTCACAGTTACTGTGAATAATCTACTCCAAATGTGATGCATTGTGATTCATGATAAAGTTTCTGCACATCAAGCATACGAAGAATCAAGGACATGCACAACTATAGCGTTTTTTCCGGCTGTGTCCTCGGAAATACATAGGGCTCATTGTATGTATATGAGTCAGGACGCATCTGTCGTATTCGGAAAATAAATGATGTATGATGCAAAGTTTCAAGTTGTGTAATGCAAGTTCA 1942 0.4248 MASTVVAISAVSTVLSIVGLQFWTKLSLDKLESDGLISKNLTDLDNANHAIEFLLGSYATIGLLANFIINVFILLNLCLKAIFFSELYPSETRKLVERLINYVIYKGTFLPLIVPATIYHAGLWSAWLIVLCSFKMIQALARDRLERLNASPSARPWAYFRVYSALLFVFLVDVFWIRLCLAIYKTLGSSMLLLLFFEPLSIAFETLQAILVHGFQLLDIWLHHATYTSAYCQRSKLFDTLTAGLLLEWKGILVRNLGFFLDMATFLMALGHYLHIWWLHGMAFHLVDALLFLNIRALLSAMIKRVKGFIRLRITLGALHGALPDATTEELQAYDDECAICREPMAKAKRLNCKHLFHLTCLRSWLDQGLAEIYTCPTCRKPLFVGRPENEANSNTREISSDERLALQMSAGFDRSNSARHTMPAGLYPNQAPNAVGAGADSGWLHSWPNQSVDGAGPSTAIRSVGLGRVQMMMRHLASVGETYAQTALEDTAWNLWSINPSQASSSGSAIPPAGGRFPARSGSLHVRTPSQSANGDLANLLAMAETVREVLPHISDDLIFQDLQQTNSVTVTVNNLLQM 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00254 580 Gene3D - 539 579 - -
Bach13g00254 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 9 580 - -
Bach13g00254 580 Pfam Ring finger domain 336 380 IPR001841 -
Bach13g00254 580 SUPERFAMILY RING/U-box 325 387 - -
Bach13g00254 580 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Bach13g00254 580 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Bach13g00254 580 Pfam CUE domain 544 580 IPR003892 GO:0043130
Bach13g00254 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 387 IPR013083 -
Bach13g00254 580 ProSiteProfiles CUE domain profile. 540 580 IPR003892 GO:0043130
Bach13g00254 580 CDD RING-H2_AMFR 336 383 - -
Bach13g00254 580 SMART ring_2 338 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00254 Bach-Chr13 6387370 6397170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00254 58 421 C3H Transcription Factor Family AT3G16090 27.525 1.73e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00254 K10636 - gmx:100819656 907.516