Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00234 ATGGATGCTCTCGAATCGAACTCCAATCCCCCTCATCTACCTTCATCAGAAATTCTATCTTCTTACGATCAAAACCCTCCTCCTCCGCCTTCAGAGAATTTTACATCTAATTACAGTAATGCATCGCAGCAATTTGAACAACAAGTTGCACCTTCTGGTGTTCAATTCCAATCGAATATCTCAGCTTACGATGGTAAGAACTTGAACGAAGGTGCTCCCTCTAATGGCCACACCGATTACAATATTGCCAAGCCTTTGCTGTCGGTGAACGGGGTGACAAATACCCAGAGCGGCACTGATAAGGATCAATCCGGAGGTGAAGAGGAGACCACTAGCAAACGCCGGCGACGGAGTCGGTGGGATCCGCAGCCGGATTCCAATGACCAGAGCGGTGGTGAATCGGGTAGCGGAGCCAGGAAGAGAAAGTCTCGTTGGGCTGATGAAGAGCCCAAGCCGGTGATTCAGCTCCCTGATTTTATGGGTGGTATTGAATTCGATCCCGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAAATTAGTCGAATGCTACAATCTGGTTTGCCTCTAGATGATCGGCCAGAAGGTGCTCGATCGCCTTCACCCGAACCTATATACGATAATATGGGAATTAGGATTAACACTAGGGAGTATCGTGCCCGCGAGAGATTGCAAAAGGAGAGACAAGAAATTATATCCCAAATTATAAAGAAAAACCCAGCTTTCAAGCCACCGGCAGATTATAGGCCGCCCAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATACCCAGGTTATAATTTTATAGGGCTTATTATTGGTCCAAGAGGTAACACCCAGAAGCGGATGGAGAGAGAAACTGGTGCCAAAATTGTGATTCGTGGTAAAGGGTCAGTTAAAGAGGGTAGGCTGCAACAGAAGAAGGATTTGAAACCTGATCCTTCGGAGAATGAAGATTTGCATGTTTTAGTAGAGGCAGAAACGCAGGAATCACTTGATGCTGCTGCAGGGATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAAGTGTTGAACGAGCATAAGAGGCAACAGCTTAGAGAACTTGCCACCTTGAATGGGACAATTAGGGATGAAGAATATTGCCGATTATGTGGTGAACCTGGTCATCGTCAATATGCTTGTCCTACACGTACCTCTACATTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCACCCAAGCATAGATTGTCCAGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGGACAGTTCCTGAATCAGCAACAAAGCAAACCTCTACATTGGCCCTTGGTGCAGGAAATTCTGGGAACAATCCTCCTTGGGCTAACAATTCCACCTCAGTTGGTGGTTCAGCACACCCTGGATTGGGGTCTAATCCCCTGAAAAAGGAAATTGATGATACCAATTTGTATATCGGTTATTTGCCTCCCACTCTTGAAGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATCAAAGATCGAATGACCGGCTTGAGTAAAGGATATGGCTTTGTAAAATATGCTGATGTTCAAATGGCTAATAATGCAATTATGGCCATGAATGGTTATCGCCTTGAGGGTCGAACCATTGCAGTGAGAGTTGCTGGTAAACCTCCTCAACCGACTGTACCTCCTGGCCCACCAGCATCAACCATGCCTACATATCCTGTTTCAAGCCAGCAAGTTGGTGCCTATCCATCCCAACAATATGCTGCTGGTGGCCCCCTTGGGACTGCACCTTTTCCAAGCTACGGAGGCACCCCAGTTCCATGGGGACCTCCTGTTCCTCCTCCATATGCACCTTATGCTCCTCCCCCTCCTGGGTCAACAGTGTATCCTCCTATTCCAGGTCAGCCTATGCCCCCTTATGGCGTGCAGTATCCTCCAGTACAGACCGGCCCTCCTGGTGCTCCATCCCAGCCTGCAATGTCCACTGAAGCACAGCAGAGTTATCCTCCTGGAGTGCAGTCCGACAGTAGTACCTCTACTCAATCTTTACCGACCAATATGTATGGGAGCTCAGTACCTCCAATGCCACCTACAGCACAACCTACATATCCCGCATCATATGGTTATTCATCTTATTACAGCGCAGTTCCTTCACCACCTCCCCCGCCTGGTCCTGTACCTGTCTCGACTTCAGATCAGTCCCAGGGCATTGGGAATGTTCCTTGGGCTGCTAATCCTCTCGTACCACCTCCTCCATCTGCAGAGAAGCCAACATATGGTTCAGATCAATCCCAGGGCATTGGAAATGTGCTTTGGGCAACAAATCCTCCAGTGCCTCCTCCTCCTTCATCTGCAGAGAAGACAGCCTATGGTGCAGATTCAGAGTACGAGAAATTCATGGCAGAGATGAAATGA 2454 0.4764 MDALESNSNPPHLPSSEILSSYDQNPPPPPSENFTSNYSNASQQFEQQVAPSGVQFQSNISAYDGKNLNEGAPSNGHTDYNIAKPLLSVNGVTNTQSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQSGGESGSGARKRKSRWADEEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKKDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLALGAGNSGNNPPWANNSTSVGGSAHPGLGSNPLKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASTMPTYPVSSQQVGAYPSQQYAAGGPLGTAPFPSYGGTPVPWGPPVPPPYAPYAPPPPGSTVYPPIPGQPMPPYGVQYPPVQTGPPGAPSQPAMSTEAQQSYPPGVQSDSSTSTQSLPTNMYGSSVPPMPPTAQPTYPASYGYSSYYSAVPSPPPPPGPVPVSTSDQSQGIGNVPWAANPLVPPPPSAEKPTYGSDQSQGIGNVLWATNPPVPPPPSSAEKTAYGADSEYEKFMAEMK 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00234 817 MobiDBLite consensus disorder prediction 568 582 - -
Bach13g00234 817 SUPERFAMILY Retrovirus zinc finger-like domains 370 416 IPR036875 GO:0003676|GO:0008270
Bach13g00234 817 MobiDBLite consensus disorder prediction 565 589 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 186 207 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 34 65 - -
Bach13g00234 817 FunFam splicing factor-like protein 1 244 372 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 770 784 - -
Bach13g00234 817 Pfam Splicing factor 1 helix-hairpin domain 141 248 IPR032570 -
Bach13g00234 817 FunFam splicing factor 1 372 425 - -
Bach13g00234 817 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 560 IPR000504 GO:0003723
Bach13g00234 817 ProSiteProfiles Zinc finger CCHC-type profile. 400 414 IPR001878 GO:0003676|GO:0008270
Bach13g00234 817 PANTHER RNA-BINDING PROTEIN RELATED 102 610 IPR045071 -
Bach13g00234 817 MobiDBLite consensus disorder prediction 135 151 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 667 702 - -
Bach13g00234 817 ProSiteProfiles Zinc finger CCHC-type profile. 374 388 IPR001878 GO:0003676|GO:0008270
Bach13g00234 817 ProSiteProfiles Type-1 KH domain profile. 267 339 - -
Bach13g00234 817 SMART c2hcfinal6 373 389 IPR001878 GO:0003676|GO:0008270
Bach13g00234 817 SMART c2hcfinal6 399 415 IPR001878 GO:0003676|GO:0008270
Bach13g00234 817 MobiDBLite consensus disorder prediction 449 474 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 1 22 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 652 666 - -
Bach13g00234 817 Pfam KH domain 267 315 IPR004088 GO:0003723
Bach13g00234 817 MobiDBLite consensus disorder prediction 449 479 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 652 804 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 102 123 - -
Bach13g00234 817 SMART kh_6 252 344 IPR004087 GO:0003676
Bach13g00234 817 Gene3D - 459 572 IPR012677 -
Bach13g00234 817 SUPERFAMILY RNA-binding domain, RBD 484 579 IPR035979 GO:0003676
Bach13g00234 817 CDD KH-I_BBP 251 344 - -
Bach13g00234 817 Gene3D - 373 425 - -
Bach13g00234 817 MobiDBLite consensus disorder prediction 87 101 - -
Bach13g00234 817 FunFam splicing factor-like protein 1 469 571 - -
Bach13g00234 817 SMART rrm1_1 490 563 IPR000504 GO:0003723
Bach13g00234 817 MobiDBLite consensus disorder prediction 1 153 - -
Bach13g00234 817 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 252 378 IPR036612 GO:0003723
Bach13g00234 817 Gene3D K Homology domain, type 1 244 372 IPR036612 GO:0003723
Bach13g00234 817 Gene3D - 166 243 IPR047086 -
Bach13g00234 817 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 567 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00234 Bach-Chr13 5992804 5995257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00234 489 680 Eukaryotic Initiation Factors Gene Family AT3G16380 27.103 8.22e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00234 K13095 - qsa:O6P43_029889 1156.35