LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach13g00169	ATGATAGTGAAGGCGAGGGGTTCGCAACAACTGGTGTTGCTGTTTGCCATTGCATTAGCAACTGTGGGAGCAGCTGCAGCTCAAGCTGATCAGGTTTCATATCCTGTTGCCCTAACTGGCTGCCCCGACTCCCGGGGAAATCTTACAATCCCATATCCATTTGGCATAGGCAAATCAAATACAACAGGTCTAAACTGTTTCTTGAACGAAACCTTTGAACTCACTTATAACGGCTCTACATTATATCTTGGTAATACCGCAGTTTCAAACATATCCCCAAAAGGTCATGTGGAAGTGAACCTTTCCGTCTCTTCTGTTTGTTATAATGCATCAATGACCATTAGTCGCCAAACCTCCTTCCGGGTGGGTTCTTACACCATCTCTAGCAAGATGAACAAGTTCTTTAGTGTTGGCTGCGACACTTATGGGTATCTCAATAGTTTCCAAAATGGTCTATACTATTCAACTGGATGCTTAACAAGATGCAATAATGGAACCAATACAGAGAACAGTGAAAGTTGTTCAGGGATTGGGTGTTGCCAGGTGGAGATTCCTCTAGGAATGAAGAACATCACTATCAGAGCATATAGTTTTGATGACTACAAATATGTGAATAAGAATTTAAACCCCTGCAGCTACTCTTTTGTACACAAATCGGATGTTGGTGGTTCTGACTATAAGTTTTCTGTCAATGATGTGAATCATGGTCTACCATTTACAAGTGCTCCCGTGGTGCTTGATTGGGCTGTTGAGACATGTAATGCTTGCGGAAAAAACAGCCATTGTAACGACACAGAGTATAAATATAGGTGCGACTGTGATGATGGTTTTGAAGGAAATCCATACCACCCGGATGGTTGCCAAGACATCAATGAATGTGATGAGAATCGTACGACATCAAAACATGCTTGCTCAGGCAACCAAATTTGTATAAACAAAATTGGATATTTTTCTTGTGTCTGCAAGAACGGGGATCCTGTGGACGAAAAAGAATGCGAAAAAAAAGATCCGGAAGATTCATTTATCAAGGCTGTCGTGGTTGCAGGTGCAGGATTTATAGCTCTGCTAGTGGGCATGTCCACCACATACTTGGTATATCAGAAAAGAAAACTCATTAAACTTAAAGAGAAATTCTTTAGGCAAAATGGGGGTTTCATTTTGCAGCAGCAACTCTCTACAAGAGAAGATTACTCTAGAAGTACAACTAAAATTTTCACAGCAGAGGAACTTAAAAAGGCAACCAACAACTATGATGAGAGCTTAATCATAGGTAAAGGAGGCTTTGGTACTGTTTTCAAAGGGTTTTTATCTGATAATAGGATTGTTGCTATCAAAAAGTCCAAACTAGTGGACCAAAGTCAAGTTGAGCAGTTCATTAACGAGGTGGTTGTTCTATCCCAAATAAATCATAGGAATGTGGTCAAGCTCTTTGGTTGTTGTTTAGAAACTGAAGTTCCTTTATTAGTCTATGAATTTGTAAACAATGGCACCCTCTATGATTATATTCACAATGAATCAAAGGCAGGCAATGTTTCTTGGGAGACACGCTTAAGGATAGCAACAGAAGCAGCAGGAGCGTTAGCATACCTTCACTCAGCTGCCTCCATTCCCATAATACATAGAGATGTTAAAACTGCAAACATTCTCCTCGATGAGACTTACACAACCAAAGTTTCGATTTTGGAGCCTCGAGATTAG	1698	0.4046	MIVKARGSQQLVLLFAIALATVGAAAAQADQVSYPVALTGCPDSRGNLTIPYPFGIGKSNTTGLNCFLNETFELTYNGSTLYLGNTAVSNISPKGHVEVNLSVSSVCYNASMTISRQTSFRVGSYTISSKMNKFFSVGCDTYGYLNSFQNGLYYSTGCLTRCNNGTNTENSESCSGIGCCQVEIPLGMKNITIRAYSFDDYKYVNKNLNPCSYSFVHKSDVGGSDYKFSVNDVNHGLPFTSAPVVLDWAVETCNACGKNSHCNDTEYKYRCDCDDGFEGNPYHPDGCQDINECDENRTTSKHACSGNQICINKIGYFSCVCKNGDPVDEKECEKKDPEDSFIKAVVVAGAGFIALLVGMSTTYLVYQKRKLIKLKEKFFRQNGGFILQQQLSTREDYSRSTTKIFTAEELKKATNNYDESLIIGKGGFGTVFKGFLSDNRIVAIKKSKLVDQSQVEQFINEVVVLSQINHRNVVKLFGCCLETEVPLLVYEFVNNGTLYDYIHNESKAGNVSWETRLRIATEAAGALAYLHSAASIPIIHRDVKTANILLDETYTTKVSILEPRD	565

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach13g00169	565	ProSiteProfiles	Protein kinase domain profile.	417	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach13g00169	565	FunFam	Wall-associated receptor kinase 2	386	492	-	-
	Bach13g00169	565	ProSitePatterns	Protein kinases ATP-binding region signature.	423	446	IPR017441	GO:0005524
	Bach13g00169	565	Pfam	Protein kinase domain	419	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach13g00169	565	CDD	EGF_CA	289	324	-	-
	Bach13g00169	565	Gene3D	Transferase(Phosphotransferase) domain 1	493	561	-	-
	Bach13g00169	565	ProSitePatterns	Calcium-binding EGF-like domain signature.	289	319	IPR018097	GO:0005509
	Bach13g00169	565	SMART	serkin_6	417	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach13g00169	565	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	262	273	IPR000152	-
	Bach13g00169	565	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	538	550	IPR008271	GO:0004672\|GO:0006468
	Bach13g00169	565	Gene3D	Laminin	251	295	-	-
	Bach13g00169	565	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	310	321	IPR000152	-
	Bach13g00169	565	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	36	559	IPR045274	GO:0007166
	Bach13g00169	565	SUPERFAMILY	Protein kinase-like (PK-like)	399	559	IPR011009	-
	Bach13g00169	565	Gene3D	Phosphorylase Kinase; domain 1	384	492	-	-
	Bach13g00169	565	SMART	egfca_6	253	288	IPR001881	GO:0005509
	Bach13g00169	565	SMART	egfca_6	289	333	IPR001881	GO:0005509
	Bach13g00169	565	Gene3D	Laminin	296	337	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach13g00169	Bach-Chr13	4805993	4812163	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach13g00169	41	559	Receptor kinase-like Gene Family	AT1G21250	44.052	8.71e-134	405

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Bach13g00169		Pkinase	2.1e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach13g00169	-		-	gmx:100819535	606.675