LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach13g00147	CCACCGCCACCGCCACCATGGGACGTGTCCGAACAAAGACGGTGAAGAAATCTTCCCGTCAAGTGATAGAGCGCTACTACTCGCGCATGACCCTGGATTTCCACACCAACAAGAAGATTCTCGAAGAAGTTGCCATCATTCCCTCCAAGAGGCTCCGCAACAAGATCGCTGGCTTCTCCACCCATCTCATGAAGCGCATCCAGAAAGGTTCCGTTCGCGGTATCTCCCTGAAGTTGCAGGAGGAGGAACGCGAGCGCCGCATGGACTTCGTTCCCGACGTTTCTGCCATCAAAACCGACAACATTGAAGTCGACAAGGAGACCCTCGACATGCTCAATGCTCTCGGAATGAACGAGATTCCCGGTCTTGTTCAGGTTGATCCTGCTGCGCAGCCGCAGCAGACCTTTGGATTTGGTAGACCCAGGAGGTACTGAATGGGACGTGTCCGAACAAAGACGGTGAAGAAATCTTCCCGTCAAGTGATAGAGCGCTACTACTCGCGCATGACCCTGGATTTCCACACCAACAAGAAGATTCTCGAAGAAGTTGCCATCATTCCCTCCAAGAGGCTCCGCAACAAGATCGCTGGCTTCTCCACCCATCTCATGAAGCGCATCCAGAAAGGTTCCGTTCGCGGTATCTCCCTGAAGTTGCAGGAGGAGGAACGCGAGCGCCGCATGGACTTCGTTCCCGACGTTTCTGCCATCAAAACCGACAACATTGAAGTCGACAAGGAGACCCTCGACATGCTCAATGCTCTCGGAATGAACGAGATTCCCGGTCTTGTTCAGGTTGATCCTGCTGCGCAGCCGCAGCAGACCTTTGGATTTGGTAGACCCAGGAGGTACTGAGTGAGGGGTTTGAATTCGTCTAAGATTTTGTTTTGAAAGAAGTTAGTTATAGTTTTAGTCTTGTATCGTTATTTTGGGATTCTGATTTTGTCTACAAGACATGGATTATTGTTCTGAATTTTACTATGCAGAATTAATTTAGTC	995	0.5035	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGSVRGISLKLQEEERERRMDFVPDVSAIKTDNIEVDKETLDMLNALGMNEIPGLVQVDPAAQPQQTFGFGRPRRY	138

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach13g00147	138	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Bach13g00147	138	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Bach13g00147	138	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Bach13g00147	138	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Bach13g00147	138	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Bach13g00147	138	FunFam	40S ribosomal protein S17	1	62	-	-
	Bach13g00147	138	PANTHER	40S RIBOSOMAL PROTEIN S17	1	126	IPR001210	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach13g00147	Bach-Chr13	4265071	4265648	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach13g00147	1	138	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	82.979	8.56e-80	230

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach13g00147	K02962		-	csv:101204345	238.424