Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00145 ATGCGGAACTCCTTACGCAGCTACGGCTTCCACGCATCAAGGACACTAGAGGGAATCCTATTGACTAAGGAAGCAAAAATGGCGTACGCAGCGATGAAGCCAACTAAGCCGGGTTTGGAAGAGACCCAGGAGCAGATCCACAAGATCAGGATTACCCTTTCCTCCAAGCACGTGAAAAACCTTGAGAAGGTTTGTACTGACTTGGTTCGTGGAGCCAAGGACAAAAGGCTGAGGGTCAAGGGACCAGTGAGAATGCCCACTAAGGTTCTTAATATCACTACCAGAAAATCCCCCTGTGGTGAAGGTACCAACACTTGGGACAGATTTGAGCTCCGAGTGCACAAGAGAGTAATTGACCTCTACAGTTCTCCTGATGTTGTTAAGCAGATTACCTCAATTACAATTGAACCAGGCGTTGAGGTAGAGGTCACCATTGCAGATGCCTAATTTGGCCACTATTTTTGGTCTGCTTACTAGTGCCTTTACGTAATTTAGCCTCTTGGCTATAGATCTTGATTCCAATACTGTTATGATGTAGGTTTGGTGTCATTTCATTTTGCTTAATTTTGCTGAAGTTGATAACTTGGAAGTTTTATTTAGTTTGTGATGGACATTTATGAATACCATGAGAAATTTATTGCTTC 644 0.4348 MRNSLRSYGFHASRTLEGILLTKEAKMAYAAMKPTKPGLEETQEQIHKIRITLSSKHVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00145 148 FunFam 40S ribosomal protein S20 33 147 - -
Bach13g00145 148 ProSitePatterns Ribosomal protein S10 signature. 72 87 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bach13g00145 148 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 30 147 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach13g00145 148 Hamap 30S ribosomal protein S10 [rpsJ]. 46 145 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach13g00145 148 Pfam Ribosomal protein S10p/S20e 50 144 IPR027486 -
Bach13g00145 148 PRINTS Ribosomal protein S10 family signature 105 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach13g00145 148 PRINTS Ribosomal protein S10 family signature 83 98 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach13g00145 148 PRINTS Ribosomal protein S10 family signature 48 61 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach13g00145 148 Gene3D Ribosomal protein S10 domain 32 147 IPR036838 -
Bach13g00145 148 NCBIfam 30S ribosomal protein S10 47 145 IPR005729 GO:0003735|GO:0006412|GO:0015935
Bach13g00145 148 SUPERFAMILY Ribosomal protein S10 48 145 IPR036838 -
Bach13g00145 148 SMART Ribosomal_S10_2 50 144 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00145 Bach-Chr13 4250921 4253010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00145 27 148 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 90.984 8.60e-79 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00145 K02969 - gmx:100500017 237.269