Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00120 TTTCCCTCTCTTTTTTTCTTTAGATCTGTTCTGGCGAATCAAACCTTAGAAACGGTGTCGTATTTCTCTGAATAGACAGAAGAGGTTTCGTTAGCTCCCATCGTCGTCATGGTTGTGAACGAGAGGCCATCAAAGAGGATGAAGAGAAGAGTCAGTGCCGATCTCTACGATTTTCTTACTTTTCCTGCCGCTGGAGACTGCTGCTGCGACGTAGGTGTTGAGCCTTTCAGGAAAGCTATTCAGCGATTTCTGTCTAGTCACGCTCGGCTTACTTTCCCGCCCTCAGTTTTTCCATCCCTGATGACATGGCAGATCATGTTCCGGATTGGAGGCCTTGTTGATGGGCCGGATCTGTCGCCGGCGATGGTTACTCTTGACATTGTTGAGGAGGATGTGACTAGATCTAGAAGTTCAGTCTACTGCGATCAGTGCCGAGTCGTTGGCTGGAGTGGGCATCCGGTGTGCCGAAAGCGATTCCATTTCATCATAAGGGCTGCTTCAAGTAATCCCATTGATTCATATCAAAGACCCTGTTCAAGATGTGGAAATGTTCTCCAATTATCAGAACAAAGGTGCAAGTGGTGCAGCTCTTTGATTACTGTGGATGATCTTGAAGATTGGGTGTATCTACAAATTGAAGGCAATACTCATCTTCTGCACGGTGTCGTTCACTCTAATGGTTATGGCCATTTGCTTACTCTCAATGGAAGAGAAGGTGGCACCAAGCTTCTTTCTGGGTCTGACATTATGGGATTTTGGGATAGGCTTTGTGCTGCACTCTCCGTTAGAAAGGTTAGCGTGATGGATTTGTCAAAGAAATATGGGCTGGAATTTCGATTGCTTAATGCAATAACCAATGGTTGTTCTTGGTATGGCAATTGGGGCTATGAATTTGGCACTGGCAGTTATGCTCTGACTGAAGATGCTTACCAGGAAGCAGTGAATACCTTGTCTAACATGCCGTTGTCCTCTTTCCTGTTCCAAGGTCGGGGTCCACATAATCGCCTGCAGTGTGTTATTTCCCTTTACCAATCCTTGGCAGAAATTGAACTTTTAACCATCAAAGATCTCTTCTCCTATCTATTAAACTTGATTCATGAATTCCACAAGCCCTTGACCACAAGTGCAGCTAAACAGCGTGAATCTTTGAACAATTGCAATATATTATGTGCTTGGACAAGGAATGATGTTGAAGGTGTACAACAGGCTTTAATTAAGGTATTGCTTGCCGCCACTGCCTCAAGCGATGGCAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCTGTGAGCAGAGGAATTGCATCTCCCGAGCTTCTAGATTACAGTCTTAAACACTTGGGGGGAAAATTGGCTTCCAATGGCATGATTGTTAAGTCAAAATGTAATCCTGTTACTAGTGCTTTGGAGTTCAGGCTTGAATCTTTGGACATTGTGAAAAATGGATTTAATGCAAATTCAAGTTATCCATCCGTAGAGCAAGTGATGTGTGATCTGAGGTTCTTATTTGATTCAATTGTTCATCCTGACAAGATGGTCAATTACAGACCTAGGATTATGAGGAAACGGGTGGCAGATTCAGCCAGGAAGCTCCTTGATTGCAAGCAATTCCTGAAGGTTTATGGACCACACAAAATGGTAGAAGACTTGCCTAGAGCCATTACGCTATGGTGTTACGTGGAGCTTTCAGATCAGCCTAAAGATGACCCTTCCCCGCCACCAGAACTCGTTGTATTGCCCTTGAATGCCACCGTTACTGACCTCAAGCGCGAAGCAACTAATGCCTTTCAAGATGTATATGCCATGTATAAGAGGTTTCAAGCTGAGGAACTCCTTGAATATGGGTCTATCAGTGATTCCATCACTGTAAAATTGTTGCTTGGAACTGGAGGATCAGTCAAAATTCAAGGTAAATGCCCAGCAAAACATGGTCTAAATCGATTCCGAATGGAAAGAGGAACAGAGACATGGAAAGTTGATTGCCCTTGTGGTGCTAAGGATGATGATGGTGAAAGAATGTTGGCATGTGATACATGTGGTGTCTGGCAGCATACTAGATGTGCTGGAATTGATGACTCTGATGCCATTCCTTCGAAGTTTGTGTGCATGCGATGTGTTAACTCATATCGTGAGGAAGCAAAAGCAAAAGAATTGCCAGACTCAAGTGGGGAGGCAAATAAGGCTTGTAAACCCAGCGCTTCTTGCAGGGGTGAAGCAGTGGCAGCAGGCAATCCTGCAATCGCTTGTAATATGACTGTGAATTTTGGTGTACGTTGAGTGTAAAGTGATTTTGTATCTGTACAGATCTCAGTTGTTTTAGGCTTTGACCATGTGGATAAGCCTTTTGAAATTTGGGAGCTTGTGCTCTTATCAGTTTTGCTTGATATGACATTATCAA 2395 0.4405 MVVNERPSKRMKRRVSADLYDFLTFPAAGDCCCDVGVEPFRKAIQRFLSSHARLTFPPSVFPSLMTWQIMFRIGGLVDGPDLSPAMVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRFHFIIRAASSNPIDSYQRPCSRCGNVLQLSEQRCKWCSSLITVDDLEDWVYLQIEGNTHLLHGVVHSNGYGHLLTLNGREGGTKLLSGSDIMGFWDRLCAALSVRKVSVMDLSKKYGLEFRLLNAITNGCSWYGNWGYEFGTGSYALTEDAYQEAVNTLSNMPLSSFLFQGRGPHNRLQCVISLYQSLAEIELLTIKDLFSYLLNLIHEFHKPLTTSAAKQRESLNNCNILCAWTRNDVEGVQQALIKVLLAATASSDGKWVTRRALKGAVSRGIASPELLDYSLKHLGGKLASNGMIVKSKCNPVTSALEFRLESLDIVKNGFNANSSYPSVEQVMCDLRFLFDSIVHPDKMVNYRPRIMRKRVADSARKLLDCKQFLKVYGPHKMVEDLPRAITLWCYVELSDQPKDDPSPPPELVVLPLNATVTDLKREATNAFQDVYAMYKRFQAEELLEYGSISDSITVKLLLGTGGSVKIQGKCPAKHGLNRFRMERGTETWKVDCPCGAKDDDGERMLACDTCGVWQHTRCAGIDDSDAIPSKFVCMRCVNSYREEAKAKELPDSSGEANKACKPSASCRGEAVAAGNPAIACNMTVNFGVR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00120 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 675 IPR013083 -
Bach13g00120 721 SUPERFAMILY FYVE/PHD zinc finger 614 671 IPR011011 -
Bach13g00120 721 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Bach13g00120 721 Pfam PHD-finger 624 670 IPR019787 -
Bach13g00120 721 CDD PHD_MMD1_like 623 668 - -
Bach13g00120 721 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 678 - -
Bach13g00120 721 SMART PHD_3 623 669 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00120 Bach-Chr13 3679372 3682870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00120 83 668 PHD Transcription Factor Family AT5G22260 28.618 8.08e-84 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bach13g00120 PHD 3.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00120 K26271 - qsa:O6P43_029942 1073.92