Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00100 ATGAAGCAGGTCGTGGGAACAGTGGTTTCACATAAGATGCAGAAATCAGTGGTGGTTGCAGTGGATAGGCTATTCTACCACAAATTATACAACCGTTATGTCAAACGTACCTCTAAATTTATGGCACACGATGAGCAAAACCACTGCAACATTGGTGACCGAGTCCAACTAGATCCTTCTAGGCCTTTGAGCAAGCATAAGCATTGGATTGTTGCTGACATTCTCAAGAAAGCACGAATATATGTTCCACCCTCCACTCCAGCAACTAACAGTCCAAGCACCGGTTCTCAATCACCTGCTTCATAA 306 0.4412 MKQVVGTVVSHKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDEQNHCNIGDRVQLDPSRPLSKHKHWIVADILKKARIYVPPSTPATNSPSTGSQSPAS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00100 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Bach13g00100 101 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Bach13g00100 101 MobiDBLite consensus disorder prediction 84 101 - -
Bach13g00100 101 Pfam Ribosomal protein S17 6 72 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach13g00100 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach13g00100 101 Gene3D - 1 93 IPR012340 -
Bach13g00100 101 FunFam 30S ribosomal protein S17 1 100 - -
Bach13g00100 101 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Bach13g00100 101 MobiDBLite consensus disorder prediction 82 101 - -
Bach13g00100 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach13g00100 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach13g00100 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00100 Bach-Chr13 3174517 3174945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00100 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 39.437 5.70e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00100 K02961 - gmx:100500188 169.474