Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00065 ATGGCTCGTGGAAAGGTTCAGTTGAAGCGAATCGAAAACCCAGTGCATAGACAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTTAAGAAGGCTAAGGAGCTCTCCGTGCTTTGCGACGCTGAAATTGGCGTTGTCATTTTCTCCGCTCATGGAAAGCTATATGAACTAGCCACCAAAGGAACCATGCAAGGGCTCATAGAGAGGTACACGAAGTGCACCCATGGGGCTATGCCTGAAGCTGCCATTGAAGCACATCCTCTGGAATACAAAGAGGAGATTGACGTGCTCAAACAAGAAATTGGATCACTGGAAAAGAGTCTGAGCTATTTATTTGGAGGGGCAACTGGGACGATGTCAATGAACGAATTACGGGTTCTGGAGAAGAATCTTGAAATCTGGATTTATCATATTCGTTCAATGAAGATGAATATGATGTTACGAGAAATCCAAACATTGAGGGATAAGGAAGGAGTACTAACTGCTGCAAATGAATATCTCCGAGATAAGATTGTGGAGAACACTGTACCGACCAACTTTGCACCATTTGGTGCTTCTACTTCAAACCCACAGACCATACAGGACGAAATATTTCAGCTCTAG 603 0.4494 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELATKGTMQGLIERYTKCTHGAMPEAAIEAHPLEYKEEIDVLKQEIGSLEKSLSYLFGGATGTMSMNELRVLEKNLEIWIYHIRSMKMNMMLREIQTLRDKEGVLTAANEYLRDKIVENTVPTNFAPFGASTSNPQTIQDEIFQL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00065 200 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bach13g00065 200 Gene3D - 15 76 IPR036879 GO:0003677|GO:0046983
Bach13g00065 200 Pfam K-box region 89 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach13g00065 200 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Bach13g00065 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bach13g00065 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach13g00065 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach13g00065 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach13g00065 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach13g00065 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach13g00065 200 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach13g00065 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 145 - -
Bach13g00065 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00065 Bach-Chr13 2315321 2322390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00065 1 200 MADS-box Gene Family AT1G71692 60.190 1.20e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach13g00065 K-box 3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00065 - - gmx:100783345 298.516