Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00062 ATGGGTAGGGGCAAGATTGAGATCAAAAGGATTGAGAACACCACTAATCGCCAGGTTACCTTCTGCAAGAGGAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTATCAGTGCTGTGTGATGCTGAAGTTGCCCTCGTTGTCTTCTCCAGCCGCGGACGCCTCTATGAGTATTCAAACAACAACATAAGATCAACCATAGTGAGGTACAAAAGGGCTTGTTCTGATAACTCAAGTACGAGCTCTACAATTGAAATCAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTACGACAGCAAATTCAGATGCTGCAAAATTCAAACAGGCACTTGATGGGTGATGCCTTGAGCACATTGACTGTAAAGGAACTTAAGCAACTAGAGAATAGACTTGAGAGAGGAATGAATAGAATCAGGTCCAAGAAGCATGAGATGCTGCTGGCCGATATCGAATATTTGCAGAAAAGGGAGATTGAACTGGAAAATGAAAGTCTTTGCCTTCGAACTAAGATAACAGAAGTTGAGAGGCTCCAACAAGCAAACATAGTTTTTGCACCAGAGTTCAATGCTATTCAAGCCTTAGCTTCACGCAATTTCTTCAGCCCAATCATGACTGAAGGTGCATCTGCATATCCACAACCAGCAGACAAGAAAATTCTTCATATTGGGTGA 672 0.4226 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNNIRSTIVRYKRACSDNSSTSSTIEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGMNRIRSKKHEMLLADIEYLQKREIELENESLCLRTKITEVERLQQANIVFAPEFNAIQALASRNFFSPIMTEGASAYPQPADKKILHIG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00062 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach13g00062 223 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Bach13g00062 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach13g00062 223 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach13g00062 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach13g00062 223 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Bach13g00062 223 Coils Coil 121 144 - -
Bach13g00062 223 Coils Coil 87 107 - -
Bach13g00062 223 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Bach13g00062 223 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bach13g00062 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach13g00062 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach13g00062 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach13g00062 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach13g00062 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach13g00062 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00062 Bach-Chr13 1948297 1955703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00062 1 223 MADS-box Gene Family AT4G09960 72.174 2.50e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach13g00062 K-box 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00062 K09264 - tcc:18593065 383.645