Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00016 CTCGAATCGAGGTTTCTTCTTCTCTGTTTCTCTTCGAAAAGTTTCTTTTTTCACTGATTAATTGAAGGCGCATGGGATTTCGCGTTGGAACTAAAGAATTATATGCTAGTAATATGGAAAACTCTATCAAATCAAGTATTCAGAAGGTTGCAATAAGAGTAAAAATGGGTAAATTTGATTTCAAAGCTCTAGAATGGACAGATGAGATAAAGGAATGTCCTGTATACCACCCTTCCGAACAAGAATTCAAGGATCCGTTGGATTATCTGCAGAAGATTACTCCCGAGGCTTATTCATATGGAATCTGTAAAATTGTTTCTCCCAAAAAAGCTTCTATTCCGGCTGATGTTGTCTTAAAGGCTTTCAAGTTTATGTCTCTTGAACAGCCTCTTCGGCTTTCAAAATGGAATGAGAAGGATTACATAGTCTATAAATGTGGAAGAGAATACACTTATTCTGAGTTTCAAGCTGTAGCAGACAAAGCCTTACGCATATCTTCACATATTGCTTCATTCATCTCAGAATTTCTTAGGCTGAAAAAATCCATTTTCCGATTCATTCATAAACCAATTCCAGGAGTAACTGATCCCATGCTTTACATTGGAATGCGATTCAGCATGTTTGCATGGCAGGTAGTGGATCAATATCTCTGCAGCATTAATTACCTTCACTCAGGTGCATGCAAGACTTGGTATGCATATCATGCTGGATTTAGTCATGGCTTCAACTGTGGAGAGGCAGTAAACTTTGCTGTAAGTGGTTGGTTTCCATTTGGGGAAAAAGGCTACCAAGCGTTATGCAAATCTAAGGATGCCCCACTTATTGTTCCTTTTGAGGAACTTCTTTAG 848 0.3833 MGFRVGTKELYASNMENSIKSSIQKVAIRVKMGKFDFKALEWTDEIKECPVYHPSEQEFKDPLDYLQKITPEAYSYGICKIVSPKKASIPADVVLKAFKFMSLEQPLRLSKWNEKDYIVYKCGREYTYSEFQAVADKALRISSHIASFISEFLRLKKSIFRFIHKPIPGVTDPMLYIGMRFSMFAWQVVDQYLCSINYLHSGACKTWYAYHAGFSHGFNCGEAVNFAVSGWFPFGEKGYQALCKSKDAPLIVPFEELL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00016 258 PANTHER LYSINE-SPECIFIC DEMETHYLASE 154 209 - -
Bach13g00016 258 Gene3D Cupin 43 144 - -
Bach13g00016 258 SMART cupin_9 141 243 IPR003347 -
Bach13g00016 258 Pfam JmjC domain, hydroxylase 174 209 IPR003347 -
Bach13g00016 258 ProSiteProfiles JmjN domain profile. 49 90 IPR003349 -
Bach13g00016 258 SMART JmjN_1 48 89 IPR003349 -
Bach13g00016 258 SUPERFAMILY Clavaminate synthase-like 124 246 - -
Bach13g00016 258 Gene3D Cupin 209 256 - -
Bach13g00016 258 Gene3D Cupin 145 208 - -
Bach13g00016 258 Pfam jmjN domain 50 82 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00016 Bach-Chr13 1006292 1009279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00016 42 84 C2H2 Transcription Factor Family AT5G04240 44.186 6.19e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bach13g00016 JmjC 1.5e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00016 - - qsa:O6P43_001767 197.208