Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g02026 ATGGAATCTGACTTGGAGTTCGCTTTTCGTCTCCAGTTGCAAGAAGCACTCGCTGTCTCCCTCGCTTTGGGGCCCTCCTCCTCCTCCTCCTCTTCTTCCGTACAAGAATCCCAGGTCACAGGTTACGTTGACGTTCCAAAGGTCGCTAACCTTCGATCCGAGCAGCTGGCTAAGCTTCAGCAAGAAATCAAGGATCGAGAGCAGAGTGAGATCGAAACGCGTAAGCTCAAGGATGATCTCTGCCGTCGGATACATGATCAGAAGTTTGCAAGGGAGATTCTGAAAGTTTCCGAGGATGATTGGAGAGATTGGGGTGACAATTTCGAGAAACCCCTTGGCGAGGGTTTCTCGAGCTCTAAGCAGGAAACTTTAGGGAGCAACGACGATGCCGTTTTTAAATTGTACTTCAAAGGGATGGTGAGCGAGGAGAGGATTAGAGGTGAAAAAAGTGTTTTAGCAGGGATTGGAATTGCGATATGTGACCCCATGGACAATTTGATATTCGAGGTGAGCAAGCCACTGCTTGGGAATGGAATGAGCAAGAATGCTGCAGAGGCTAAGGCTTTAATTGAAGGGCTTTACGCTGCTGTTGCTTTGGACTTGAGCCGTATCACGTTTTACTGCACCTACCATCCGCTGTACCAATTTGTAAGTGGAAGATGGCCTCCGAAACAGCGGAAGATTGCCATGCTAGTTGATCAGGTTACTCTGCTTCGAAGAAAATTTACATACTGCAATCCAAAGCTTGTGACTGGACGGGATGTTAAATTTGCATTTAAGTTCGCAAAAGATGCAATTATGTCACAGATCAAAATGCCTGAAGAATCTAGCCATTCAAAGAATCCGAATGAGACTTGTGTCATATGTTTGGAAGATACTGATGTTAGCAACATTTTTTCAGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTCCATGGAATGCTGCCAAAATGCCCTCATGAAGGTTGCAATTCTGAACTTGTCATTGACAGCTGCAGGAAATTCTTGACTCGTACATTAATCGAGACCATGCAGAATCGAATAAAGGAAGCATCAATTCCTGTTTCTGAGAAAATTTATTGCCCTTATCCAAGATGCTCTGTATTAATGTCAAAAACTGAGATTTTGGAGTATGCTAAGAATATGTTTGGCGACAGTGCACAATCAGGACCCAAGAAATGCATTAAATGTCATTTTCTTTTCTGTCTCAGCTGCAAAGTCCCTTGGCATAGTGGTCAGACATGCACAGATTACAAAACGTTGAATCCTAACCCTCCTGCTGAAGATGTGAAGCTGAAGTCTCTGGCAACAAGGAGTCTATGGCGGCAGTGTGTGAAGTGCAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTGGCTATGAATTTTGCTATAACTGTGGAGCTGAGTGGAAGAACAAGAAAGCAACATGTTCTTGTCCACTTTGGGATGAGGACAATATTTGGTTGGAGGATCACGAGGGAGACACGGAAGAAGAAGAAGGTGAAGAATATTATGAATCTGATAGTTCTGATGATTATTATTAAGCAGGAATTCCCCC 1610 0.4404 MESDLEFAFRLQLQEALAVSLALGPSSSSSSSSVQESQVTGYVDVPKVANLRSEQLAKLQQEIKDREQSEIETRKLKDDLCRRIHDQKFAREILKVSEDDWRDWGDNFEKPLGEGFSSSKQETLGSNDDAVFKLYFKGMVSEERIRGEKSVLAGIGIAICDPMDNLIFEVSKPLLGNGMSKNAAEAKALIEGLYAAVALDLSRITFYCTYHPLYQFVSGRWPPKQRKIAMLVDQVTLLRRKFTYCNPKLVTGRDVKFAFKFAKDAIMSQIKMPEESSHSKNPNETCVICLEDTDVSNIFSVDGCQHRYCFSCMKQHVEVKLLHGMLPKCPHEGCNSELVIDSCRKFLTRTLIETMQNRIKEASIPVSEKIYCPYPRCSVLMSKTEILEYAKNMFGDSAQSGPKKCIKCHFLFCLSCKVPWHSGQTCTDYKTLNPNPPAEDVKLKSLATRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWDEDNIWLEDHEGDTEEEEGEEYYESDSSDDYY 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g02026 531 ProSiteProfiles Zinc finger RING-type profile. 286 330 IPR001841 -
Bach12g02026 531 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 184 501 IPR031127 GO:0004842|GO:0016567
Bach12g02026 531 SMART ibrneu5 439 496 IPR002867 GO:0008270
Bach12g02026 531 SMART ibrneu5 353 426 IPR002867 GO:0008270
Bach12g02026 531 Pfam Zinc finger, C3HC4 type (RING finger) 286 330 IPR018957 GO:0046872
Bach12g02026 531 SUPERFAMILY RING/U-box 281 365 - -
Bach12g02026 531 CDD Rcat_RBR_unk 452 487 - -
Bach12g02026 531 Pfam IBR domain, a half RING-finger domain 444 494 IPR002867 GO:0008270
Bach12g02026 531 Pfam IBR domain, a half RING-finger domain 367 426 IPR002867 GO:0008270
Bach12g02026 531 Pfam Reverse transcriptase-like 148 265 IPR002156 GO:0003676|GO:0004523
Bach12g02026 531 FunFam RBR-type E3 ubiquitin transferase 132 269 - -
Bach12g02026 531 FunFam RBR-type E3 ubiquitin transferase 424 530 - -
Bach12g02026 531 FunFam RBR-type E3 ubiquitin transferase 281 366 - -
Bach12g02026 531 SUPERFAMILY RING/U-box 441 503 - -
Bach12g02026 531 MobiDBLite consensus disorder prediction 507 531 - -
Bach12g02026 531 Coils Coil 59 79 - -
Bach12g02026 531 ProSitePatterns Zinc finger RING-type signature. 304 313 IPR017907 -
Bach12g02026 531 ProSiteProfiles TRIAD supradomain profile. 282 506 IPR044066 -
Bach12g02026 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 364 IPR013083 -
Bach12g02026 531 Gene3D - 132 272 IPR036397 GO:0003676
Bach12g02026 531 CDD BRcat_RBR_unk 366 429 - -
Bach12g02026 531 Gene3D - 424 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g02026 Bach-Chr12 18961132 18964172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g02026 96 485 C3H Transcription Factor Family AT2G19610 32.323 2.86e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g02026 - - qsa:O6P43_000294 769.229