Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g02025 ATGGAGATTTGTACGGACGTAGATGAACTCCGAACCCTACTTTCCGAGCAAGGCAAAGAGTTGGTGAGGGCTAAAACCCTAGACGCCGATTTAGACTTTGCTTTCCAACTGCAAATGCAAGAAGTGGTTAATACTTCTCTCGCTTCCCAACCATCAGTTTCAACCATCGCGCCATCTTCATCTTCGGTTTCATCACTGCCAGAGGGAGAGATGAATGGTGATGTTCCGGGCTTGGCGGCGACGCTTATGCTGGAGGATGTGCAGAGTTTCACGCAACGACTGGCGGACCACGAAAAATGTCAAGCGGAGATGAGAAGAATGGTGGAAGATGTGGACCGTTGGGTTTTTTATCGGAAGTTCGCCAGAGAAATTCTTCATATACCTGAGCCTGAGTGGAGAAAGTACGGTGACAATTTCCATAGGCCCTACTACAAGGACGGAGCTTCATCTTCTTCTTCGTCTTCGCGGAGCCCTTCTCTGGAAACAGAGTATTTCAAAATGTACTTCAAGGGTTTAGTCACAGGCAGAGTGTTGGCAAGCCACGGAAAATTGGCAGGGCTAATCAATCAGTTGTCTCATCTTCGGCAAAAATTTATGTATTGTGTGCCATCTTTTGTTGGAAAGAATGATATCAAATATGCTTTTAAATCTGCAAGAGATTCCTTAGTTTCTCAAATCACATGGTCTGAAGAAACTGATAACGGGGAGAGGCTGAAGGAAACTTGTGTCATTTGTTTTGAAGATACTGATTCTGAGAAAATATTTTCAGTGGATAATTGCCTGCATAGGTACTGTTTTTCATGTATGAAAAAGCATGTGGAGTTGAAGCTGCTCAATGGGATGACGGCAAAGTGCCCTCATGATGGTTGTAACTCGGAGGTGAACGTTGAGAGTTGCAGAAAACTTTTAGCGCCAGAGTTGTTTGGAGTCATCAGCCAACGCATGAAGGAATCGGCTATTCCTGTTACAGAGAAAGTGTATTGTCCATTTCTTAGGTGTTCAGCTTTGATGTCAAAGCATGAGGTCTTAGAGTACACAATGCCTACGTTTATTGGAGCTAAACAATGTGGAGCCAGGAAATGCATGAAATGTCATCAACTTTTCTGTGTCAATTGTGCAGTTCCCTGGCATTACAATATGACCTGCTATGACTATAGAAGGTCAAATCATTGTCTTCAGTCAGGAGACACTAAGCTGAAGTCTCTTGCTACTAAGAAACTGTGGCGTCAGTGTGTGAAGTGCAATCACATTGTTGAACTAGCTGAAGATAAGTCTTTGAGATACAGCTATGATGTTCAACCAGGTGAACTTGTGGAAGAAATCCTACTGGCCTGGAGTTCATGTGGTTGA 1350 0.437 MEICTDVDELRTLLSEQGKELVRAKTLDADLDFAFQLQMQEVVNTSLASQPSVSTIAPSSSSVSSLPEGEMNGDVPGLAATLMLEDVQSFTQRLADHEKCQAEMRRMVEDVDRWVFYRKFAREILHIPEPEWRKYGDNFHRPYYKDGASSSSSSSRSPSLETEYFKMYFKGLVTGRVLASHGKLAGLINQLSHLRQKFMYCVPSFVGKNDIKYAFKSARDSLVSQITWSEETDNGERLKETCVICFEDTDSEKIFSVDNCLHRYCFSCMKKHVELKLLNGMTAKCPHDGCNSEVNVESCRKLLAPELFGVISQRMKESAIPVTEKVYCPFLRCSALMSKHEVLEYTMPTFIGAKQCGARKCMKCHQLFCVNCAVPWHYNMTCYDYRRSNHCLQSGDTKLKSLATKKLWRQCVKCNHIVELAEDKSLRYSYDVQPGELVEEILLAWSSCG 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g02025 449 Pfam Zinc finger, C3HC4 type (RING finger) 242 286 IPR018957 GO:0046872
Bach12g02025 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 320 IPR013083 -
Bach12g02025 449 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 113 422 IPR031127 GO:0004842|GO:0016567
Bach12g02025 449 SMART ring_2 242 288 IPR001841 -
Bach12g02025 449 SUPERFAMILY RING/U-box 240 322 - -
Bach12g02025 449 ProSiteProfiles Zinc finger RING-type profile. 242 288 IPR001841 -
Bach12g02025 449 ProSitePatterns Zinc finger RING-type signature. 260 269 IPR017907 -
Bach12g02025 449 ProSiteProfiles TRIAD supradomain profile. 238 449 IPR044066 -
Bach12g02025 449 FunFam RBR-type E3 ubiquitin transferase 237 322 - -
Bach12g02025 449 Pfam IBR domain, a half RING-finger domain 324 382 IPR002867 GO:0008270
Bach12g02025 449 CDD BRcat_RBR_unk 322 385 - -
Bach12g02025 449 SMART ibrneu5 309 382 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g02025 Bach-Chr12 18957464 18959966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g02025 173 419 C3H Transcription Factor Family AT2G19610 33.735 3.16e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g02025 - - qsa:O6P43_000295 380.563