Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01960 ATGCCTTCACATCACCACCGCCCCTTATCGTCCTCCATTGTCACCTCTTCATTTTGGTCAGAATACCAGAGGAAAGGCAAAGCCTGTGCTTCGGCTTTCAATTCTTTTCTTAGTCTCTGCAATACTGGTATAATGGAGATATCCTTGTTAAAGTTGCTTGTTAATGGCATATCCTCATATTTGCATTTACCATATTCTGGGAAAGTGAATTCAGAACCTGTCTCAAAGTATTACCAAAAGGCAGAGGAGATACTTAAGCTGATAAAGCCTATAATTGATGTGATTGATAATTCTGATTTAGCTTCTGATGCTGTGCTTACTTCTATAATTGAAGAATTGGGTCAGTCTGTTGATGAGTTGAGGGAGCTTATTGAGAACTGGCACCAAATGTCTAGCAAAGTTTACTTTGTTATGCAAGTGGAGGCATTGATATCTAGGATCCGGACTTTAGGACTCAAAATGTTCCAGCAGCTGAAGGATTCCCATCAGTGTCTCTCTGATGAATTGAGCTCTGTAGATCTTGAGCACTACATGCAGAAACTCAAGCATTTGGGACATGAAGAAACATCAACAGTCATTAAAGAAGCAATTAAGGAACAACTTGCAGGTGCAGGGCCTAGTTCGGATGTCCTGGCAAAACTTGCTGATGCTCTGGGGCTGAGGTCCAACCAGGAGGTTCTAATTGAGGCTGTGGCCCTTGTAAAGTTGAAGGAGAATGCTGAACAGGTTGATAAGACTGCAGAAGCTGAATATATTGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAGCGTCTTGTTATACTTAAGGAAGCACAGAGCAGTTGCCCCATTCCTGTACCTCGTGATTTTTGTTGTCCTCTCTCTTTGGAATTAATGACAGATCCAGTTATCGTGGCATCTGGGCAAACCTATGAGCGTGCTTTTATTAAGGAATGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACAGGTCAAACTCTGGCTCACACCAATTTAATACCAAACTACACTGTAAAGGCACTAATTGCAAATTGGTGTGAATCAAACAACGTGAAGCCAGTTGATCCTATAAGACCTACAAACTTAAGCCAAGTATCTTCCCTTCATGGCCCTGTGGAGTCTGGTGTAAATAGGGAATCACCTGTTTATGCTCATTCCCGGGGCAACCAGGCATCCTCACCTGAACCAACTTGCTCTCGTTCTCTCAGTTCACCAGCTAAGAACCTAACATCTTCTGGTGGGATCCACCGTGAGGGAACATCACCATTGCATCCCCGTTCAACTTCTGAAGGTTCCTTAAGTGTTGCAGCCAATGCGGAGATTTTGGATATTGCAAGAATATCACTGAGAGGTTCTGATGACAGGTCTGTTAGCTCAGATGAAAAGAGTGTAGATTCAGTTGGCCAACCCTCAATGTCACCATCTAGAAGGGAATCTTCCCATGTACTCTCCTCTGAACAGTCTCAGATCCATGTTACAACTGCTTCCAATTCCAGTTCACTTTCTAATGGCAATATTCTTCAAGGAACAGAGGGTGATGGAAACAATGCTTCTCAGGACCCAGGCTATGATAGAGATTCATGTGGGGAAGTAAATCCAGGGTTAGAGACTGCTGTTACTAGTGCAGCAACTAATCCACAAAGAGAACCTGGGCTCTCACCCCGATTTTTAGAGACTAGATCCCGAAGCCTGGCCCCATGGCGGCGGCCATCTGAGAGATTGGTTCCTAGGATGGTGTCTTCTTCTGCTATGGAGACAAGAGCTGATCTTTCTGCTATTGAAACCCAGGTTCGGAAGTTAGTTGAGGATTTGAAAAGCCCTTCTCTTGAGACTCAAAGAGATGCAACAGCAGAGCTCCGGCTTCTTGCTAAGCACAATATGGATAATCGGATTGCGATTGCGAACTGTGGAGTTATTAACTTGCTAGTTGAGTTACTCCAATCAAACGATGCAAGGATTCAGGAAAATGCTGTTACAGCGCTTCTCAACTTATCAATTAATGATAACAATAAAACTGCAATTGGAAATGCCGGTGCAATTGAGCCTCTGATTCATGTCCTTGAAACAGGGAGCCCGGAAGCCAAGGAAAATTCGGCTGCCACTCTTTTCAGCTTATCGGTGATTGAGGAAAACAAGGTCAGGATAGGAAGATCTGGGGCAATTAATCCACTAGTTGATTTATTAGGCAATGGAACACCTCGGGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGTATTGTTCAAGCTGGTGCTGTTAAGCACCTTGTAGATTTGATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTTTTGGCAAATCTTGCAACAATCCAAGAAGGAAGATCTGCTATTGGTGCTGAAGGTGGGATTCCAGTTCTGGTTGAGGTCGTTGAGTTAGGTTCTGCAAGGGGAAAGGAGAATGCAGCAGCTGCACTTGTGCATCTTTGTTCACACAGCAACCGATTTTTAAGCATGGTGCTGCAGGAAGGTGCTGTCCCACCATTAGTGGCTTTGTCCCAGTCAGGCACCTCAAGGGCCAAAGAAAAGGCACAGGCACTTCTCAGCCATTTTCGAAATCATAGACATGCTAATGGTGGGAGAGGCTGA 2646 0.4426 MPSHHHRPLSSSIVTSSFWSEYQRKGKACASAFNSFLSLCNTGIMEISLLKLLVNGISSYLHLPYSGKVNSEPVSKYYQKAEEILKLIKPIIDVIDNSDLASDAVLTSIIEELGQSVDELRELIENWHQMSSKVYFVMQVEALISRIRTLGLKMFQQLKDSHQCLSDELSSVDLEHYMQKLKHLGHEETSTVIKEAIKEQLAGAGPSSDVLAKLADALGLRSNQEVLIEAVALVKLKENAEQVDKTAEAEYIDQMVALVTRMHERLVILKEAQSSCPIPVPRDFCCPLSLELMTDPVIVASGQTYERAFIKEWIDLGLTVCPKTGQTLAHTNLIPNYTVKALIANWCESNNVKPVDPIRPTNLSQVSSLHGPVESGVNRESPVYAHSRGNQASSPEPTCSRSLSSPAKNLTSSGGIHREGTSPLHPRSTSEGSLSVAANAEILDIARISLRGSDDRSVSSDEKSVDSVGQPSMSPSRRESSHVLSSEQSQIHVTTASNSSSLSNGNILQGTEGDGNNASQDPGYDRDSCGEVNPGLETAVTSAATNPQREPGLSPRFLETRSRSLAPWRRPSERLVPRMVSSSAMETRADLSAIETQVRKLVEDLKSPSLETQRDATAELRLLAKHNMDNRIAIANCGVINLLVELLQSNDARIQENAVTALLNLSINDNNKTAIGNAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKVRIGRSGAINPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIQEGRSAIGAEGGIPVLVEVVELGSARGKENAAAALVHLCSHSNRFLSMVLQEGAVPPLVALSQSGTSRAKEKAQALLSHFRNHRHANGGRG 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01960 881 FunFam RING-type E3 ubiquitin transferase 581 876 - -
Bach12g01960 881 SUPERFAMILY RING/U-box 272 357 - -
Bach12g01960 881 Pfam U-box domain 280 350 IPR003613 GO:0004842|GO:0016567
Bach12g01960 881 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 638 680 IPR000225 GO:0005515
Bach12g01960 881 Gene3D - 776 877 IPR011989 -
Bach12g01960 881 MobiDBLite consensus disorder prediction 463 523 - -
Bach12g01960 881 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Bach12g01960 881 Pfam Armadillo/beta-catenin-like repeat 668 707 IPR000225 GO:0005515
Bach12g01960 881 Pfam Armadillo/beta-catenin-like repeat 711 748 IPR000225 GO:0005515
Bach12g01960 881 Pfam Armadillo/beta-catenin-like repeat 629 666 IPR000225 GO:0005515
Bach12g01960 881 Pfam Armadillo/beta-catenin-like repeat 752 788 IPR000225 GO:0005515
Bach12g01960 881 SUPERFAMILY ARM repeat 597 870 IPR016024 -
Bach12g01960 881 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 761 802 IPR000225 GO:0005515
Bach12g01960 881 MobiDBLite consensus disorder prediction 452 534 - -
Bach12g01960 881 Gene3D - 578 670 IPR011989 -
Bach12g01960 881 MobiDBLite consensus disorder prediction 385 433 - -
Bach12g01960 881 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 720 762 IPR000225 GO:0005515
Bach12g01960 881 PANTHER U BOX DOMAIN-CONTAINING 73 871 - -
Bach12g01960 881 Coils Coil 110 130 - -
Bach12g01960 881 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Bach12g01960 881 FunFam RING-type E3 ubiquitin transferase 279 354 - -
Bach12g01960 881 CDD RING-Ubox_PUB 281 333 IPR045210 -
Bach12g01960 881 Gene3D - 671 775 IPR011989 -
Bach12g01960 881 SMART arm_5 709 749 IPR000225 GO:0005515
Bach12g01960 881 SMART arm_5 750 789 IPR000225 GO:0005515
Bach12g01960 881 SMART arm_5 627 667 IPR000225 GO:0005515
Bach12g01960 881 SMART arm_5 668 708 IPR000225 GO:0005515
Bach12g01960 881 SMART arm_5 790 830 IPR000225 GO:0005515
Bach12g01960 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01960 Bach-Chr12 17902369 17909904 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01960 240 881 U-box Gene Family AT2G23140 61.111 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01960 - - gmx:100811250 1199.5