Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01862 ATGTCTGGTCGAGGAGGGAGGGACCGACTTAGAAGGGATCACCCTTTGAGATATGAAGATAAGAGCGTCAGTACTTGGCGTAGCAATAGCAATAATCCACCTTCTAGGCACCTTTGGGTCGGGAATCTACCTCACAATATAGTAGAGGAAGATGTTGCTCATCATTTCTTACGGTTTGGACCACTTGAGAGTGTCGCTTTCCAGCCCGGTCGCAGCTATGCTTTCATTAATTTCGAGAGGGATGAAGATGCTATTGATGCCTTGAAAGCACTACAAGGTTTTCTTCTAGCAGGCAATCCACTTAGAATTGAATTTGCAAAGGCGGATAAGCCATTGATGGTATCACGTGATGAAGATTCCTCTTGGGAGGAAAGAGGCCCAGCATTAAGAGAATCCCCTTTCACCCAAAGAGAGTATAGAGGACGCCATGGTAGCCCTGAACCACTTTATTCTGATAAATCCAAGCTGAGTGACAAAAATCCAGAGCCCAGTGAGGTTTTATGGATAGGGTTTCCATCTCAACTGAAAGTGGATGAATTTACTTTAAGAAAGGCTTTTTCTCCTTTTGGTGAGATTGGGAAGATTACTACATTTCCAGGTCGTAGTTATGCTTTCGTTCGCTTTAGGAGTCTGGTGTCAGCATGCAGGGCAAAAGAGACCCTGCAGGGGAAGTTGTTTGGAAATCCTCGCGTACATATCTGCTTTGCCAAAAGTGACACTGGCTCAAGTGGTGGGAGGAGCTCAATTAATGCCCCTCCTTCTCCATTTTACAAGCCAAGTGGTCGTCAGAGGTCTCCTGATAGCCTCAGGCAGGAAAGAAATTATATAGGCTTGAGTGATCATAGCATTAGTCCCCCTAATTTTTCCTCAAATTGGGATCCTGGAGATTCTGATGCCTATGATTTCAATGCAAGGGGTTCTTCATGGGCTGGGGGAAATAACGCATATGAGCAAAGGAGAGTTGGGGAAAAAGGGCCTCCGCTGGGAATATCACGAGAAATCTATGATCATTCAAATAGTCCTTCAAGAGATAGACTTGTTCATTTGGGTGATCTTCCGCAGAGAATTCCCCTAAAGGGCGCATTGTTTGATGATCCACGGAGTTTTCCAGAAGATGACCACTTTCTACATGAGGCTAAAAGGATGAAAGCAGGCTCCTTTCCTCCTGAGGATATTCCTGATTATCCTTTGTCAGACTTAGGAAGACAGAAACATGCATTCCCTCAGATGTTATCTGATTTCCCCCAGCTTGAGGCATGTGACAAAAGCTTTGATGCTGGATCTTTTGCTTATAGACAGACTCCTGATCACATACCAAATTCACCTTTAGCTCGTTCAGATAGAATTGATCATTGGCAACCTTATGATGGTTTCCAAATGGGTCATAGTGCTCTGCAATCAAATTCTGTTGAGAAGAGAAAATTGATGCCTGAACTTAAAACTGTGTCGGCAATGGAGTGGAAATGGGAAGGAACTATTGCAAAAGGTGGAACTCCTGTTTGCCGTGCACGATGTTTCCCTGTGGGAAAAGTCCTGGATATATTGTTACCCGAATTCTTGGACTGCACTGCGAGGACTGGTCTAGACATGCTTTCAAAGCATTATTACCAAGCCGCTGGTGCATGGGTTGTCTTCTTTGTGCCTGACAATGATGCTGAAATTGGTTTCTATAATGAATTCATGCATTATCTGGAGGAAAAGCAGCGGGCTGCAGTAGCTAAATTGGACGACAAGAACACCTTATTTCTTGTACCTCCATCAGATTTCTCAGAAAAAGTATTGAAGGTACCTGGAAAATTGAGCATTGCTGGTGTTGTCCTTAGGTTGGATCATCCCAGTTCAAATAATGGGCCCATGCACGATCAAAAAGAAATAGAAGATGTAAAATTATCATCCTATCACGGGGATACTTTCTATCCAAAACCATCAGTGACATCAACTCTTTTCCCTCCTTCCACATCTGTTCCAGAATTGGGTAGGTCTGGAATGAGCAATCTTTCTTTCCTTGGCAATAAAATGACATCTGCTCCACTTACATTAGTTTCAGGGTCAGCTCGGGGTGTTAATATAACTGAGTTTCATGATGAAAGAAGGCATGATTATCCTAATCCTATCCAGCAGCAGAATCCTATGTCTGGACCAAACTGGTCTTCTCCCCATTTGCAGAACCTGATATCGAATAGAAGTTTACCAATGCAAGTACCAAATGGCGGTGCCGAGTACATCCTTCAAGAGCATCAGCAATTCATGCATAGGGAAGTGCCAGATGCAAACTCCAGTCAGCGAACGGGTGGAATTTCTGGTATTCCATTATCTGGGAACAGCAAGTCACCACTTCAGGAAATAAGACCTATGGATTCTTCATCCATATCTGTAGGATCCTTGCAACCGGAGCAGCTTGCACAACTAGCATCTCTTCTTGGGCAGAGGAGGCAATCAGGAAGCTCTCAGAGTGCATCTACATTGGATGATCCCAGGCAGATTAACAGAGTTATGAGGTCTGACACCTCATCTGGACCATCCCAGAAATATGCTGTTGAAAACAACCCAGTGAAACCTGAACTCTCAACGTCTCAATTTGGTCAAGTTTTGCAGTTGCAAAAGCAACAACAGATGTCAAATGTGCCTCAAGAGCCACAATTGGCTCATAGAGAACCACAAAGAGGGGCTAGCGAAAATCAGCAGATGATGAATAGTAGCTTGCCCGAAGATGCGGCAGAAGATCCACAGAAACGTCTACAAGCAACGTTACAGCTTGCTGCAGCTCTTCTTCAGCAAATCCAGCAAGGGAAATGA 2796 0.4417 MSGRGGRDRLRRDHPLRYEDKSVSTWRSNSNNPPSRHLWVGNLPHNIVEEDVAHHFLRFGPLESVAFQPGRSYAFINFERDEDAIDALKALQGFLLAGNPLRIEFAKADKPLMVSRDEDSSWEERGPALRESPFTQREYRGRHGSPEPLYSDKSKLSDKNPEPSEVLWIGFPSQLKVDEFTLRKAFSPFGEIGKITTFPGRSYAFVRFRSLVSACRAKETLQGKLFGNPRVHICFAKSDTGSSGGRSSINAPPSPFYKPSGRQRSPDSLRQERNYIGLSDHSISPPNFSSNWDPGDSDAYDFNARGSSWAGGNNAYEQRRVGEKGPPLGISREIYDHSNSPSRDRLVHLGDLPQRIPLKGALFDDPRSFPEDDHFLHEAKRMKAGSFPPEDIPDYPLSDLGRQKHAFPQMLSDFPQLEACDKSFDAGSFAYRQTPDHIPNSPLARSDRIDHWQPYDGFQMGHSALQSNSVEKRKLMPELKTVSAMEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPDNDAEIGFYNEFMHYLEEKQRAAVAKLDDKNTLFLVPPSDFSEKVLKVPGKLSIAGVVLRLDHPSSNNGPMHDQKEIEDVKLSSYHGDTFYPKPSVTSTLFPPSTSVPELGRSGMSNLSFLGNKMTSAPLTLVSGSARGVNITEFHDERRHDYPNPIQQQNPMSGPNWSSPHLQNLISNRSLPMQVPNGGAEYILQEHQQFMHREVPDANSSQRTGGISGIPLSGNSKSPLQEIRPMDSSSISVGSLQPEQLAQLASLLGQRRQSGSSQSASTLDDPRQINRVMRSDTSSGPSQKYAVENNPVKPELSTSQFGQVLQLQKQQQMSNVPQEPQLAHREPQRGASENQQMMNSSLPEDAAEDPQKRLQATLQLAAALLQQIQQGK 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01862 931 SUPERFAMILY RNA-binding domain, RBD 152 240 IPR035979 GO:0003676
Bach12g01862 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 230 IPR000504 GO:0003723
Bach12g01862 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 101 IPR000504 GO:0003723
Bach12g01862 931 MobiDBLite consensus disorder prediction 239 268 - -
Bach12g01862 931 MobiDBLite consensus disorder prediction 807 913 - -
Bach12g01862 931 MobiDBLite consensus disorder prediction 754 793 - -
Bach12g01862 931 SMART rrm1_1 166 234 IPR000504 GO:0003723
Bach12g01862 931 SMART rrm1_1 37 104 IPR000504 GO:0003723
Bach12g01862 931 SUPERFAMILY RNA-binding domain, RBD 28 117 IPR035979 GO:0003676
Bach12g01862 931 CDD RRM_SF 167 233 - -
Bach12g01862 931 PANTHER RNA RECOGNITION MOTIF-CONTAINING 22 927 - -
Bach12g01862 931 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Bach12g01862 931 Gene3D - 151 243 IPR012677 -
Bach12g01862 931 MobiDBLite consensus disorder prediction 240 254 - -
Bach12g01862 931 MobiDBLite consensus disorder prediction 807 880 - -
Bach12g01862 931 MobiDBLite consensus disorder prediction 135 158 - -
Bach12g01862 931 Gene3D - 18 113 IPR012677 -
Bach12g01862 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Bach12g01862 931 MobiDBLite consensus disorder prediction 887 901 - -
Bach12g01862 931 Pfam SPOC domain 483 597 IPR012921 -
Bach12g01862 931 CDD RRM_SF 38 104 - -
Bach12g01862 931 MobiDBLite consensus disorder prediction 133 158 - -
Bach12g01862 931 CDD SPOC_FPA-like 488 607 - -
Bach12g01862 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01862 Bach-Chr12 15295414 15305593 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01862 28 237 Eukaryotic Initiation Factors Gene Family AT4G34110 24.215 3.73e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01862 - - gmx:100811668 1096.65