Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01834 CTCCGATCTGCTCATTCCGGTAACCCTTCTTTCAAATCTGCACCATGGGTTCCAGAAAGGGCGATAACCCTCACTCCGGCGACGGCGCCAGCCCCGGGAAAATCTTCATTGGAGGATTAGCTAAAGATACAACTTTGGATACGTTTGTCAAGTACTTTGAGAAGTACGGAGAGATAACAGATTCGGTGATAATGAAAGATCGGCACACGGGTCGACCAAGGGGCTTCGGGTTTATTACCTACGCGGATCCTTCTGTAGTTGACCAAGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTTGAGATCAAAAGGACCATTCCAAAGGGTGCAGCCCTAGCTAATGATTTTAAAACCAAGAAGATTTTTGTCGGTGGTATTCCAACCACTGTAACTGAAGATGAATTTAGGAACTTCTTCTCGAAGTATGGGAAGGTTGTGGAACATGAGATCATTCGTGACCATACTACAAAGCGTTCTCGGGGATTTGGATTTGTTGTCTTTGACAGTGAAAAGGTTGTTGATGATTTGCTGACAAATGGAAATATGATTGATATGTCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCAGCACCTCTTCCTCCTTTTGGTAGTGACTCTAGGGCTCGTCCATACAGTGATGGTTATGGTGGATTTGGTGATTCTTATAGCAGTTTTGGCAGTGGCGGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGTGGTAGGCTTGGTGATTATGGTGGGTATGGCAGTGGAGAGGACTTTAGTGGTAGTTTTGGTGGGTATCCTGGTGGTGGTTTTGGTGGCTACCGAGGAGAGTCATCTTTTGGCTATTCTAGTCGCTATGGTTCCTATATGGGGGCCCTTGGCGGTGGATATGGTGGGAGTGGGTTAGGTGGATATGGCCGTGGTGGTGGGGGCTATGGAAGCTATGGTGGTCCAGGCTCAGGTGGGGGTTATGATTCAGCCCCTGGTGCTGGTTATGGTGGTGCTGGAGGACTTTATGGTAGTAGGGGAAGTTATGGTGGCAGTAGTCGTTACCATCCTTATGCAAGATAGATATATATGCCTAAGCTTTGCCTTAGAGGTTGCATGCAGGTTTAAGCTACGCATTTTGTAGACACAAGGCACTTACTGCAGGTGGGCACTATCTAGAAGTCAGACGAACTATTAGCTTGCCTATGTTACTCAATTGCCTAGACAACCGAAGGTAGAACATCATCAATCTAGAGGTTTCTGTCAGTTATCAGCTCGTGATTCTAGTTAGGCACATTCTGCTTTTCATCTTTGATAATCAGATTGTTGCAAGTTAGATTGTTGTGTTGTTTCTTGATAAGAAATTTAGTTAGACCAGTGGAGTTGTCTGAATGTGTATTATAGGTTATACATACTAGATTCTTATTTGGAATGAGTGCTTATTAATTCGTGATATTTCTATTAGTTTTTCATGGTAAGCCTATGTTAAAAGATGCTAACATAACCTTTTATGATACAGTCCCTACGGGGTAGTAATATGTTTAGTTAGACAAGACCTCTATGCCCGTTCATCTCGGTTAGTTTCACAAGGTTTCTCAAGTTCCTTAGCTATTTAAGTGTTGGTTCCATGCTGATTGCCAGCCTTGGATGATTTTAAGAATGAAAACTTAGAAAAAGGTTGGACCATTTATCCAGCCTTAATACGGAGAAGCTTATGTTAGACCGATGTTATATTGAGCGTTTATCTTAACAGCTTTCCTCTAGTTGGGAGGCTAAATGGCACAGCATACCA 1800 0.435 MGSRKGDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGAALANDFKTKKIFVGGIPTTVTEDEFRNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDSEKVVDDLLTNGNMIDMSGTQVEIKKAEPKKASNPAPLPPFGSDSRARPYSDGYGGFGDSYSSFGSGGFGPASYRSLGGFGGRLGDYGGYGSGEDFSGSFGGYPGGGFGGYRGESSFGYSSRYGSYMGALGGGYGGSGLGGYGRGGGGYGSYGGPGSGGGYDSAPGAGYGGAGGLYGSRGSYGGSSRYHPYAR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01834 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 97 - -
Bach12g01834 348 SUPERFAMILY RNA-binding domain, RBD 10 96 IPR035979 GO:0003676
Bach12g01834 348 Gene3D - 18 97 IPR012677 -
Bach12g01834 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Bach12g01834 348 SMART rrm1_1 19 90 IPR000504 GO:0003723
Bach12g01834 348 SMART rrm1_1 107 180 IPR000504 GO:0003723
Bach12g01834 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Bach12g01834 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Bach12g01834 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 98 224 - -
Bach12g01834 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 348 - -
Bach12g01834 348 SUPERFAMILY RNA-binding domain, RBD 104 213 IPR035979 GO:0003676
Bach12g01834 348 Gene3D - 98 217 IPR012677 -
Bach12g01834 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01834 Bach-Chr12 14879911 14882868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01834 4 170 Eukaryotic Initiation Factors Gene Family AT2G23350 24.737 3.09e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01834 K12741 - gmx:100801373 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g01834 12 14879911 14882868 Bach12g01834 12 14879911 14882868 ECH