Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01773 ATGCAATCAGAAAATGGCAAGTTATTTATTGGTGGAATATCATGGAACACGAATGAAGAGCGACTCAGGGAGTATTTTAGTACTTATGGGGAGGTTGTGGAAGCAGTAATTATGAAGGATCGAACAGCAGGGAGAGCCCGTGGATTTGGTTTTGTTGTTTTTGCAAACCCAGCTGTTGCAGAGAGAGTCACCAAAGAGAAGCATAACATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTCTTCCCCGGGATGACCAGAATGTACTGAATAGAAACGATGGTAGTATCCATGGTTCTCGCATTCCTGGCCGCACAAGAAAGATATTTGTTGGAGGTTTGGCATCCACAGTTACAGAAAGTGATTTCAAAATGTACTTTGATCAATTTGGGACTATAACAGATGCTGTAGTGATGTATGATCACAACACTCAGAGGCCTAGAGGCTTTGGGTTTATTACTTATGATTCTGAGGAAGCTGTGGACAAAGTCTTACATAAGACTTTTCATGAACTGAATGGTAAGATGGTTGAGGTTAAGCAAGCTGTTCCTAAAGAGTTATCACCAGGACCAAGCCACAACCCACTTAGTGAAGATAATTATGGTCTGAATAGGGTGAATAGCTTCCTAACTGGCTTCACTCAAGGATACATTCCAAATACCATTAGAGGCTATGGAGTTAGACCAGATGGTAGGTTTAGTCCGGTTGCTAGTGGTCGAAGTGGTGTTCCTCCATTTGGATCTGGTTATGGAATGGGTATGAACTTTGAACTTGGTTTAAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAGTAATCTTAGTTATGGTCGAGGATTAAATCCTTATTATGTTGGAAGCTCAAATAGGTTTAGTAGTCCAATTGGGTATGACAGTGATAGTGGAGGAAACAATTCTTTCTTTAGCTCTGTGACTCGAAATTTGTGGGGAAATGATGGTCTTAATTATGGAATTAACTCTACAAATTCCAGTGCATACATGGGATCAAGAAGTGGGAATGTTGGAAGAAACACATTTGGCAATACATTAGTCAACTGGAGTTCTTCAACAATGTATGGTCAAAGTGGAGGAAACAATGTGTCACAGAATAGCAGCAACATTGGCTATGGAAGTGGTGACTACAATTATGGTTTGCAAACTGGACGTTACGCAAGAAGCAGTGGTACCAGTATGCCCCCAACATCATCATACTCTTCATCAAATGGTTTTGATAGGGCTTTTTCTGATTTTTATAGCAGTAGTTCAGCTTATGGGGACCTTACTGGGCGGCCTTCAGATTCTGAGCGGGATGGGTCTAGTCCTTTTAGTTATGGGCTTGGCAGTTCAACTTCTGATGTTTCAGCCAAAACTTCCCTTGGTTATGTTGGTGGTTATACTAAGACAGCCAAATAG 1410 0.4135 MQSENGKLFIGGISWNTNEERLREYFSTYGEVVEAVIMKDRTAGRARGFGFVVFANPAVAERVTKEKHNIDGRMVEAKKALPRDDQNVLNRNDGSIHGSRIPGRTRKIFVGGLASTVTESDFKMYFDQFGTITDAVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKQAVPKELSPGPSHNPLSEDNYGLNRVNSFLTGFTQGYIPNTIRGYGVRPDGRFSPVASGRSGVPPFGSGYGMGMNFELGLSPGFGGNANFNSNLSYGRGLNPYYVGSSNRFSSPIGYDSDSGGNNSFFSSVTRNLWGNDGLNYGINSTNSSAYMGSRSGNVGRNTFGNTLVNWSSSTMYGQSGGNNVSQNSSNIGYGSGDYNYGLQTGRYARSSGTSMPPTSSYSSSNGFDRAFSDFYSSSSAYGDLTGRPSDSERDGSSPFSYGLGSSTSDVSAKTSLGYVGGYTKTAK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01773 469 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bach12g01773 469 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bach12g01773 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bach12g01773 469 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 467 - -
Bach12g01773 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Bach12g01773 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Bach12g01773 469 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Bach12g01773 469 MobiDBLite consensus disorder prediction 422 455 - -
Bach12g01773 469 Gene3D - 4 88 IPR012677 -
Bach12g01773 469 Gene3D - 103 188 IPR012677 -
Bach12g01773 469 CDD RRM2_Hrp1p 107 184 - -
Bach12g01773 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Bach12g01773 469 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bach12g01773 469 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bach12g01773 469 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Bach12g01773 469 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01773 Bach-Chr12 14058717 14060456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01773 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.787 3.91e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01773 K14411 - gmx:100795907 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g01773 12 14058717 14060456 Bach3g00915 3 19790165 19793585 BWGD
Bach12g01773 12 14058717 14060456 Bach12g01773 12 14058717 14060456 ECH