Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01772 ATGCAATCAGAAAATGGCAAGTTATTTATTGGTGGAATATCATGGAACACGAATGAAGAGCGACTCAGGGAGCATTTTAGTACTTATGGGGAGGTTGTGGAAGCAGCAATTATGAAGGATCGAACAGCAGGGAGAGCCCGTGGATTTGGTTTTGTTGTTTTTGCAAACCCAGCTGTTGCAGAGAGAGTCACCAAAGAGAAGCACAACATTGATGGAAGGATGGTGGAGGCAAAGAAGGCTCTTCCCCGGGATGACCAGAATGTACTGAATAGAAACGGTGGTAGTATCCATGGTTCTCGCATTCCTGGCTGCACAAGAAAGGTATTTGTTGGAGGTTTGGCATCCACAGTTACAGAAAGTGATTTCAAAAAGTACTTTGATCAATTTGGGACTATAAGAGATGTTGTAGTGATGTATGATCACAACACTCGGAGGCCTAGAGGCTTTGGGTTTATTACTTATGATTCTGAGGAAGCTGTGGACAAAGTCTTACTTAAGACTTTTCATGAACTGAATGGTAAGATGGTTGAGGTTAAGCAAGCTGTTCCTAAGAGTTATCACCAGGACCAAGCCACAACCCTCTTAGAGCATCTCCAACGGGGTTCCTTGCCCGCATCTTAA 621 0.438 MQSENGKLFIGGISWNTNEERLREHFSTYGEVVEAAIMKDRTAGRARGFGFVVFANPAVAERVTKEKHNIDGRMVEAKKALPRDDQNVLNRNGGSIHGSRIPGCTRKVFVGGLASTVTESDFKKYFDQFGTIRDVVVMYDHNTRRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKQAVPKSYHQDQATTLLEHLQRGSLPAS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01772 206 CDD RRM2_Hrp1p 107 184 - -
Bach12g01772 206 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bach12g01772 206 Gene3D - 4 88 IPR012677 -
Bach12g01772 206 SUPERFAMILY RNA-binding domain, RBD 3 100 IPR035979 GO:0003676
Bach12g01772 206 Gene3D - 103 193 IPR012677 -
Bach12g01772 206 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bach12g01772 206 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bach12g01772 206 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 186 - -
Bach12g01772 206 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Bach12g01772 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Bach12g01772 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Bach12g01772 206 SUPERFAMILY RNA-binding domain, RBD 105 189 IPR035979 GO:0003676
Bach12g01772 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bach12g01772 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01772 Bach-Chr12 14050553 14051505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01772 8 180 Eukaryotic Initiation Factors Gene Family AT2G23350 22.857 7.52e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01772 K14411 - cpap:110808682 335.109