Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01660 CCACAGTCCACACAGCCAGGGGCCACACCTCCATATCCTCCGAGGTCAATCACGGACGTTCTCCGGAATTTTCTTCAAGTGCAAAGCTCGTTGAAGCGCGAGCAGAGGCAAACCAAGAAGAGATCTTTCAACCACGTTCGAATTCAGTCATGGCGCATAGGTTGCTGCGGGACCTAGAAGCTGATGGTTGGGAGCGCTCTGACTTCCCCATCATCTGTGAATCGTGCCTTGGTGACAACCCTTATGTCCGCATGACAAGGGCAGATTATGACAAAGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGGTGGAGGCCTGGTCGAGATGCAAGATATAAGAAAAGTGAGATCTGCCAGACTTGCAGTAAATTGAAAAATGTTTGTCAAGTTTGCCTTTTGGATCTTGAGTATGGACTGCCAGTGCAAGTCCGGGACACTGCTCTCAGCATCAATTCCAATGATGCCATTCCAAAGAGTGATGTTAACAGGGAGTATTTTGCTGAAGAACATGACCGTAGGGCTAGGGCTGGTATAGATTATGAATCCTCTTTTGGGAAAGCACGCCCAAATGACACCATCATGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACAGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCTGAAACTGGGGAATTGTCACAACAAAATATAAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCAATGAAGTTACTCGGTAAGGCTGGAGAGATGACCTCCCTTGAGCCTCCTGAGGATGAGAGCATTAGAACTCTATATGTTGGTGGACTTGATGCTAGGGTCAGTGAGCAGGATCTGCGGGATCACTTTTACGCCCATGGGGAAATTGAATCCATCAAGATGGTCCTCCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAGCTCTCCAACAAACTGGTTATCAAGGGCCTGAGGCTAAAACTGATGTGGGGTAGACCTCAGACAGCAAAACCCGAATCTGAAACCTTGGATCAAGCAAGGCAGCAAGCATCTGTGGCTCATAGCGGCTTGTTGCCACGAGCTGTTATATCCCAGCAGCAGAACCAGGACCAAGCCCAAGGAATGCATTACTATAACATTCCACCCCCTCCACAGCAGGAAAGAAGCTATTACCCATCCATGGATCCTCAAAGAATGGGTGCCCTTATTCCCTCTCAGGAAGGTCAACAAGGTGGCCCGTCCTCGTCAGGAGAAAATAAACCCGGTTTGGAGAAGCAGCAGGTGCAACAATACCCTCCACATTTGATGCCCCCACCACCTGGGCAACAATATCACAATCCATATTATCCTTCATACGGTTATATGCCTCCTTATCAACAGTACCCACCACCATACAATGCAGCAATGGTGCCACCACGGCCACCACCTGTAAATCAACCCTATCAGCATTCTGTGCAACCGGCGAACTCAGGATCTGCACCAGCTGAATCTGGAACATCAACATCAGGACCGCAACAGCAGTGA 1577 0.4813 MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSFGKARPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMTSLEPPEDESIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESETLDQARQQASVAHSGLLPRAVISQQQNQDQAQGMHYYNIPPPPQQERSYYPSMDPQRMGALIPSQEGQQGGPSSSGENKPGLEKQQVQQYPPHLMPPPPGQQYHNPYYPSYGYMPPYQQYPPPYNAAMVPPRPPPVNQPYQHSVQPANSGSAPAESGTSTSGPQQQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01660 475 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Bach12g01660 475 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Bach12g01660 475 Pfam Torus domain 151 194 IPR032297 -
Bach12g01660 475 MobiDBLite consensus disorder prediction 334 475 - -
Bach12g01660 475 MobiDBLite consensus disorder prediction 450 475 - -
Bach12g01660 475 SMART rrm1_1 229 297 IPR000504 GO:0003723
Bach12g01660 475 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Bach12g01660 475 MobiDBLite consensus disorder prediction 371 394 - -
Bach12g01660 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Bach12g01660 475 Gene3D - 148 209 - -
Bach12g01660 475 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Bach12g01660 475 Gene3D - 212 309 IPR012677 -
Bach12g01660 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Bach12g01660 475 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 383 IPR039171 GO:0003723
Bach12g01660 475 SUPERFAMILY RNA-binding domain, RBD 220 307 IPR035979 GO:0003676
Bach12g01660 475 CDD RRM_RBM22 227 300 - -
Bach12g01660 475 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Bach12g01660 475 MobiDBLite consensus disorder prediction 424 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01660 Bach-Chr12 12084819 12088978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01660 218 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 3.81e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01660 K12872 - gmx:100779917 795.038