Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01642 ATGGCCAAAAAGCGAAAGATTCGTTCTTCTGAACCCGAATCTACCAAACCAGTAGAACCACAACCCCCGCCGCAAGAGCCACCGCAAGAGGAGCAAGTCCCCCAAGAAACAGTGGACGAACAACCTCAACCTGAAGTAACCCAGGAGGAAGAGCCCCAGGGACCAGAAAGCATGGCCGTAGACGATGATACTCAGCAAGAAGAAGCGCGGGAACAAGAAGTTGTCGATGAAGAAGAAACCCAAGAACAGTTCGAGACTGCAGAAATTTCAGACCATGCTGCTGCTGCTCCTCCATCTGAATCAGCTGAGCACGAAGCAAATGGAGCTGAGGAAGCTGAGGAAGGTAACGAGAATGAAGATGAAAAGGACGATCTGGATGAGGAGCCCGTGGAGAAGCTTCTGGAGCCTTTCACGAAGGAGCAACTTCACTCTCTTGTCAAACAAGCGATAGAGAAGTACCCAGATTTCATGGATAATGTTCGTCAGCTGGCGGATGTGGACCCTGCCCACCGCAAGATTTTCATTCATGGTCTTGGCTGGGACACCACTGCTGAAACTCTTGTCAGTGTGTTTGGCAAATATGGTGAAATTGAGGATTGCAAGGCTGTTACTGATAAGGTCTCTGGGAAGTCCAAAGGTTATGCTTTCATCTTGTTTAAGCACCGAAGTGGGGCTAGGAAGGCGCTGAAGCAGCCTCAGAAAAAGATTGGGAACCGAACAACTTCATGTCAATTAGCTTCAGCCGGACCTGTCCCGGCACCACCACCTGTGACTGCACCAGTGTCTGAATATACTCTGAGGAAGATCTTTGTAAGCAATGTTAGTGCAGAGATTGATCCTATGAGGTTGCTTGAGTACTTTAAGCAGTTTGGGGAGATAGAGGATGGTCCATTGGGTCTTGATAGGCAGACGGGGAAGCCTAAGGGGTTTGCACTTTTTGTGTACAAGTCGGTAGAGAGTGCTAAGAGGGCTTTGGAAGAGCCGCACAAAAAATTTGAAGGGCATACATTGTATTGTCAGAAGGCTATAGATGGTCCTAAAGGAAACAAGCCATATCTTCAGCAACAGCACCAGCATCAACACCATTCTCATCATCACCAGTCTCACTACCACTCGAGAAAAGAAAAAAATAAGTACCCTACTGTTGCGCCAGGGACTGGATCCGGACACTTGATGGCACCATCAGCCCCTGGTGTGGGTTTCAATCCAGGAGTGCCACCCCAGGGGTTGAACCCCGCACTTGGGCAGGCCTTGTCTGCTTTGCTCACAACCCAAGGAGCAGGGTTAGGACTGGATCACCTGTTCGGTGGTGCGCACATGAACCAGTCTGGGCCGCCTGCTGCATATGGTAACCAGGCTGCTGTGAGTTATGGGAATCAGCCAGGGATGCAACCGGGATACCAGAATCCACAAATGGGGCAGAGCAGTGTTGTTAGGCCTCATCCTGGTGCTGGTGGTCCTTACATGGGTCATTAG 1476 0.5014 MAKKRKIRSSEPESTKPVEPQPPPQEPPQEEQVPQETVDEQPQPEVTQEEEPQGPESMAVDDDTQQEEAREQEVVDEEETQEQFETAEISDHAAAAPPSESAEHEANGAEEAEEGNENEDEKDDLDEEPVEKLLEPFTKEQLHSLVKQAIEKYPDFMDNVRQLADVDPAHRKIFIHGLGWDTTAETLVSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPAPPPVTAPVSEYTLRKIFVSNVSAEIDPMRLLEYFKQFGEIEDGPLGLDRQTGKPKGFALFVYKSVESAKRALEEPHKKFEGHTLYCQKAIDGPKGNKPYLQQQHQHQHHSHHHQSHYHSRKEKNKYPTVAPGTGSGHLMAPSAPGVGFNPGVPPQGLNPALGQALSALLTTQGAGLGLDHLFGGAHMNQSGPPAAYGNQAAVSYGNQPGMQPGYQNPQMGQSSVVRPHPGAGGPYMGH 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01642 491 SUPERFAMILY RNA-binding domain, RBD 251 351 IPR035979 GO:0003676
Bach12g01642 491 Gene3D - 163 249 IPR012677 -
Bach12g01642 491 MobiDBLite consensus disorder prediction 460 476 - -
Bach12g01642 491 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 73 344 - -
Bach12g01642 491 MobiDBLite consensus disorder prediction 460 491 - -
Bach12g01642 491 MobiDBLite consensus disorder prediction 112 127 - -
Bach12g01642 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 358 IPR000504 GO:0003723
Bach12g01642 491 SMART rrm1_1 268 340 IPR000504 GO:0003723
Bach12g01642 491 SMART rrm1_1 172 244 IPR000504 GO:0003723
Bach12g01642 491 MobiDBLite consensus disorder prediction 345 379 - -
Bach12g01642 491 SUPERFAMILY RNA-binding domain, RBD 156 247 IPR035979 GO:0003676
Bach12g01642 491 MobiDBLite consensus disorder prediction 66 84 - -
Bach12g01642 491 Gene3D - 259 380 IPR012677 -
Bach12g01642 491 MobiDBLite consensus disorder prediction 1 127 - -
Bach12g01642 491 MobiDBLite consensus disorder prediction 31 50 - -
Bach12g01642 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 248 IPR000504 GO:0003723
Bach12g01642 491 MobiDBLite consensus disorder prediction 357 373 - -
Bach12g01642 491 MobiDBLite consensus disorder prediction 16 30 - -
Bach12g01642 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 240 IPR000504 GO:0003723
Bach12g01642 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 337 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01642 Bach-Chr12 11922134 11923609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01642 267 346 C2H2 Transcription Factor Family AT2G19380 30.000 5.04e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01642 K12741 - qsa:O6P43_014622 593.193