Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01571 ATTAATTCAAATCGCTTCGTCGTTTTAGTCTTAAATTCCGGCGTTAATCTCACCGCCGCACCGGCGAATCTAAGCCGCCGCCGCCGCAGCGGTTGACATTTGAAATCTCGAAACCGGACCTCATACGGGGAGGATAGTTGTCATTTTTTTTTTTTTTATATTTGCCGCCGGTGATTTCAATTCCGGCGAGTCGTTGTCGGAAAAAGGTGCGCAGAACTATTAACCTGCGCACCTAAGGTCTTCGTGTTCTTGTATTGGAAAAATTAGTGGAAAAACTCTTTGGTTTCTATTGGTAGAAAAGAGATTTTGGAGATAGAAGATAACAAACGTATAACTGTGCTTCTTGATCTATCTTTTATCGACTTTACATTGAGAAGATTGAAGCGAAGAAAATTCTATTCTCATATGACCCAATGACTTTCTTTAGAAACTATTCAAATGAAACAGTTTCACATAGCGTCTTAGAAGAAAAAGGCCAAGGACAGAATGCAGGCAGAATCCACAGATCACTAGGTAATGAATGTGATGATGAAAGTTCCAGTGAGAAAGATATTGATATGAACTTGGATATCCAGTATCAGAGTGATGATGAACCTGATAATGCCAATAGACTACAAAACGAGGCCACAGTTGATGATGGAGTTGGTATGAGAGAATCAAACTTGCAGGCTACTGGAAGGTGGGGTTCAACTTTCTGGAAGGACCACCAGCTTATGTGTTCTCAGAATGGGTCAGAATCTAGTCAGGAATCTAAAAGTGGATCAGACTATAGAAATGCAGGAGGATCTGAAGATAATTCATCTGATGGAAGACAGGAAAGGTTAGATTTAGAAGATGATGAAGAACGAAAGGAAGCAGGAAATGGTTCAAGCAACCATTCTGATGTTCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAAGGTGGGGAAGAGCAGAGTGATTCTCTGCATTATAGGGGCATTCAACAACCCATTGGATCAAATTCTTGGCCACAACAAATGTCTAGAGGTGCCAATAGCCGTGGACGAAGGAAGGCTAGGATTTCAGAAGATGATGATGATGATGATAATGATAATGATGATGGTGATGCTGATTATGAAGAAGAGGATGAGGCAGATGAAGATGACCCTGATGATGCAGACTTTGAGCCTGCCACAAGCAGTCATACTGCAAAGAAGGATAAAGACTGGAATGTTGGAGATTCAGAAGAAGATGAAAGTGATGAGGATATAGAAGTCTCAGATGAAGATGATTATTACTATGGAAAGACACCCAAGGGGAGGCAACGTGGCAAGGTTGCTCAATGTGTAAAATCTTCTAGAGAACACTCCAGTCTTCAAAGAAGAGTTAAACCATCTTTTGAAGAGGATGAGTCAACTGCAGAGGATTTTGACAGTGAAAGTGACAAGGATTTTAAAAGCATAAAAAAGAGAGGTGTCCAGGTTCGAAAGAATAATGGGCGATCTTCTGTAGCAACAAGCTTTTCTGGGCGAAACAATGAGGTTCGAACTTCTAGTAGGACAGTCAGCAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGTTGATGAAGGAAAGAAGAAAAAGCCCCAAAAGGAGGAAATTGAAGAGGAGGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCCAAGGGCATGGCTGAAGAGGCTCAATGGAATGATAGATCAACAGAGCCTGTTCTGTTGAGCCACTTATATGATTCTGAACCTGATTGGAATGAGATGGAGTTCTTGATTAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAGTCATTTGCTGAGCTGCAAATCCTTAGTGGATTTAAGAAGGTTTTAAATTATACAAAGAAAGTCACAGAGGACGTAAGGTACAGGATGTCAGTCTCCAGAGAAGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATCTAATCAAGCAAAACAGTCAGGTGGAAAGGGTAATTGCAGATAGGATCAGCAGAGATAACTCTGGCAATGTCATTCCTGAATACCTGGTCAAATGGCAAGGACTATCCTATGCAGAAGCAACATGGGAGAAGGATGTTGATATTGCTTTTGCTCAACATGCCATTGACGAGTATAAGGCTCGTGAGGCTGCTATGTCAGTTCAAGGACAGATGGTAGATCCCCAGCGCAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGATGAACAGCCTGAATGGTTGAAGGGTGGAAAGCTCCGGGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTCCAGTCGGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCCTTTCTTGTGGTTGTCCCATTGTCCACATTGTCAAACTGGGCCAAAGAATTCCGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACACGTGCAAGTCGAGAAGTTTGCCAACAGTATGAATTTTATAATGACAAAAAGGTTGGGAGGCCTATAAAATTTAATGCATTGTTGGCTACATATGAAGTTGTTCTGAAGGATAAGGCTGTTCTCTCCAAAATCAAATGGAATTATCTTATGGTTGATGAGGCTCATAGACTAAAAAATAGCAAGGCACAGTTGTACACAACACTCTTAGAATTTAGCACCAAGAACAAGCTGCTTATCACTGGTACTCCTCTACAGAATAGCGTTGAGGAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGATAAGTTTAAGAGCAAGGATGACTTCGTTCAAAACTACAAGAATCTAAGTTCATTCAATGAAAATGAGCTTGCTGATCTTCATATGGAATTGAGGCCTCACATACTCCGAAGAGTTATCAAAGATGTGGAGAAATCTTTGCCCCCCAAAATTGAGCGTATTCTAAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTAGAACGCAACTTCCATGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTTAATATTGTGGTGGAATTAAAGAAGTGCTGCAATCACCCCTTCCTATTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCAGGAAGTAGTGACAGCAGTAAAGTGGAGAGAATTGTCTTTAGCAGTGGGAAGCTTGTCATACTTGATAAGCTGCTGGTTAGATTGCATGAGACAAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTGGATATGCTGGCAGACTATATGTCACTTAGAGGGTTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTGCGGCAGCAGGCTATGGACCATTTTAATGCACCTGGTAGTAATGATTTCTGCTTCCTCCTTTCAACACGAGCAGGGGGTCTTGGTATAAACCTTGCCACAGCAGACACTGTTATAATATTCGATTCGGACTGGAATCCCCAAAATGACCTACAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTAAACATTTATAGATTTGTAACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGAGCTAAGAAGAAAATGGTTCTTGATCATTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAAGTTATTTTGACAAAAATGAGCTATCAGCAATCTTAAGATTTGGAGCGGAAGAGCTTTTTAAGGAGGAGAAAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAGATACTTGAAAGAGCAGAGAAGGTTGAGGAGAAGGAAGATGAGGGAGAACAAGCGCATGAGTTGTTGAGTGCCTTTAAGGTTGCTAATTTCACTAATGGTGAGGATGACGGAAGTTTCTGGAGTCGTTGGATAAAACCTGAAGCAGTGACCCAAGCTGAAGAAGCCCTTGCTCCTCGTGCTGCAAGGAATATTAAAAGTTATGCAGAGGCTAATCAATCTGGAAGAGCAGAGGTTAATCTATCTGGAAGAAGTAGTAAAAGAAAAAAGAAAGGACCTGAACCTCCAGAGAGAATTCAGAAACGCTGGAAAACAGAGTATTCAGTTCCTGCAGTACCTATGATCGAGGGAGCATCTTCTCAAGTGAGAAGTTGGTCATATGGGAATTTGTCCAAAAGAGATGCACTGCGTTTTTCTCGTGCAGTTATGAAGTTTGGAAATGAGAGCCAAATTGACTTAATAGCTGCTGAGGTTGGTGGAGCAGTTGGAGCAGCTACTTCTGAAGCACTAAGTGAACTCTTCAATGCCGTGATTAATGGCTGTAGAGAAGCAGTGGACCTTGGAAGTATGGATCCAAAGGGTCCTTTGTTGGATTTCTTTGGTGTCCCTGTAAAGGCAACTGATCTGCTAAATCGTGTTCAAGAACTACAACTCTTGGCAAAACGCATTTGTCGTTATGAAGATCCCATTGGACAATTCCGTGTTTTAACATATCTCAAACCTGCCAACTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTACTTCTTGGGATATACTACCATGGGTTTGGCAATTGGGAAAAGATAAGATTAGATGAAAGGCTTGGCCTTATGAAGAAGATTGCTCCAGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTCCTTGAACAAGAACTTGCTGTTCTTGGTGGCAGAAGCCTCAATAGCAAAGTTGGTCGTAAGCCTTCCAAGGAGAGAGAACAGCTTATGAACATGTCATTGTCTCGTGGGCTGGAGAAGAAGGGGAAACTAGATTCTCCTAAAGTTAATGCCCGCATGAGAAGGGATAGACTTCAGAAACGTCAAAGAGTCGAACCAATGGTGAAAGAAGAGGGTGAAATATCTAACGATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGCCAAGATGTGATGCTTGAAGAAATGAAAACATTGAAACGTCTTCACAGGTTGCAAACAATCAGTGCTAGTCTTCCAAAGGAAAAGGTGCTTTCGAAAATCCGCAACTATTTGCAGCTTCTTGGGCGGAGGATAAATCAAATCGTATTAGAGCATGATCAAGAGCCCAATAAACAAGATAGGATGACTATGCGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTTCGTCAAATTTATTCCAAACTCAAAGAAGAGCAAGGACATGAGGTGGGGGTTGGGCCGTCTCATGCAAACGGGTCATTATCTGGTCCATTTGGCAGATATGGTAACTCTAATCCTTTCCCTCGCCAAATGCCAGAACCAATTAATCATACAGGAAAATCTGAGGCATGGAAACGACGACGAAGAGCTGAAAGTGATAGTAATTTCCAGGGTCCCCCTCTGCCTCAAAGAACCATGAGTAACGGAGTCCGAATATCTGATCCTAACTCACTGGGGATTCTTGGGGCTGGACCATCTGACAGACGTTTCGCTAGTGAAAAACCTTATAGGATGTGGTCTGGTGGGTTTCCTGCAAGATAAGGTCT 5617 0.4168 MTFFRNYSNETVSHSVLEEKGQGQNAGRIHRSLGNECDDESSSEKDIDMNLDIQYQSDDEPDNANRLQNEATVDDGVGMRESNLQATGRWGSTFWKDHQLMCSQNGSESSQESKSGSDYRNAGGSEDNSSDGRQERLDLEDDEERKEAGNGSSNHSDVPAEEMLSDEYYEQGGEEQSDSLHYRGIQQPIGSNSWPQQMSRGANSRGRRKARISEDDDDDDNDNDDGDADYEEEDEADEDDPDDADFEPATSSHTAKKDKDWNVGDSEEDESDEDIEVSDEDDYYYGKTPKGRQRGKVAQCVKSSREHSSLQRRVKPSFEEDESTAEDFDSESDKDFKSIKKRGVQVRKNNGRSSVATSFSGRNNEVRTSSRTVSKVSYVESEESEEVDEGKKKKPQKEEIEEEDGDSIEKVLWHQPKGMAEEAQWNDRSTEPVLLSHLYDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQILSGFKKVLNYTKKVTEDVRYRMSVSREEIEVNDVSKEMDLDLIKQNSQVERVIADRISRDNSGNVIPEYLVKWQGLSYAEATWEKDVDIAFAQHAIDEYKAREAAMSVQGQMVDPQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKVGRPIKFNALLATYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSKAQLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELADLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKVERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDMLADYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSNDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSYFDKNELSAILRFGAEELFKEEKNDEESKKRLLSMDIDEILERAEKVEEKEDEGEQAHELLSAFKVANFTNGEDDGSFWSRWIKPEAVTQAEEALAPRAARNIKSYAEANQSGRAEVNLSGRSSKRKKKGPEPPERIQKRWKTEYSVPAVPMIEGASSQVRSWSYGNLSKRDALRFSRAVMKFGNESQIDLIAAEVGGAVGAATSEALSELFNAVINGCREAVDLGSMDPKGPLLDFFGVPVKATDLLNRVQELQLLAKRICRYEDPIGQFRVLTYLKPANWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGGRSLNSKVGRKPSKEREQLMNMSLSRGLEKKGKLDSPKVNARMRRDRLQKRQRVEPMVKEEGEISNDEEVYEQFKEVKWMEWCQDVMLEEMKTLKRLHRLQTISASLPKEKVLSKIRNYLQLLGRRINQIVLEHDQEPNKQDRMTMRLWNYVSTFSHLSGERLRQIYSKLKEEQGHEVGVGPSHANGSLSGPFGRYGNSNPFPRQMPEPINHTGKSEAWKRRRRAESDSNFQGPPLPQRTMSNGVRISDPNSLGILGAGPSDRRFASEKPYRMWSGGFPAR 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01571 1732 MobiDBLite consensus disorder prediction 1 20 - -
Bach12g01571 1732 Pfam SNF2-related domain 630 899 IPR000330 GO:0005524|GO:0140658
Bach12g01571 1732 MobiDBLite consensus disorder prediction 32 47 - -
Bach12g01571 1732 FunFam Photoperiod-independent early flowering 1 581 855 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 129 151 - -
Bach12g01571 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1116 IPR027417 -
Bach12g01571 1732 SMART helicmild6 957 1041 IPR001650 -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 246 264 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 216 245 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 56 70 - -
Bach12g01571 1732 Gene3D - 393 519 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 348 377 - -
Bach12g01571 1732 SUPERFAMILY Chromo domain-like 498 574 IPR016197 -
Bach12g01571 1732 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 131 1625 - -
Bach12g01571 1732 SMART ultradead3 607 806 IPR014001 -
Bach12g01571 1732 Pfam Helicase conserved C-terminal domain 928 1041 IPR001650 -
Bach12g01571 1732 Gene3D - 1345 1449 - -
Bach12g01571 1732 Coils Coil 1071 1091 - -
Bach12g01571 1732 CDD CD2_tandem 517 573 - -
Bach12g01571 1732 ProSiteProfiles Chromo and chromo shadow domain profile. 428 485 IPR000953 -
Bach12g01571 1732 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 842 1072 - -
Bach12g01571 1732 ProSiteProfiles Chromo and chromo shadow domain profile. 519 583 IPR000953 -
Bach12g01571 1732 SMART DUF4208_2 1516 1621 IPR025260 -
Bach12g01571 1732 Pfam Domain of unknown function (DUF4208) 1528 1620 IPR025260 -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 1682 1700 - -
Bach12g01571 1732 FunFam Chromo domain-containing protein 1 394 519 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 101 128 - -
Bach12g01571 1732 Gene3D - 521 573 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 101 407 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 1665 1679 - -
Bach12g01571 1732 CDD CD1_tandem 404 484 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 306 321 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 180 203 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 1625 1716 - -
Bach12g01571 1732 Pfam Chromo (CHRromatin Organisation MOdifier) domain 520 574 IPR023780 -
Bach12g01571 1732 Gene3D - 602 841 IPR038718 -
Bach12g01571 1732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 623 795 IPR014001 -
Bach12g01571 1732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 931 1082 IPR001650 -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 1214 1235 - -
Bach12g01571 1732 Gene3D - 842 1072 IPR027417 -
Bach12g01571 1732 FunFam protein CHROMATIN REMODELING 5 isoform X2 521 573 - -
Bach12g01571 1732 SUPERFAMILY Chromo domain-like 402 486 IPR016197 -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 1205 1235 - -
Bach12g01571 1732 CDD SF2_C_SNF 918 1052 - -
Bach12g01571 1732 SMART chromo_7 404 487 IPR000953 -
Bach12g01571 1732 SMART chromo_7 517 576 IPR000953 -
Bach12g01571 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 832 IPR027417 -
Bach12g01571 1732 Coils Coil 1124 1151 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 378 407 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 1 80 - -
Bach12g01571 1732 MobiDBLite consensus disorder prediction 265 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01571 Bach-Chr12 11216198 11234241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01571 633 1068 RAD5 or RAD16-like Gene Family AT1G02670 25.889 1.04e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach12g01571 SNF2_N 7.2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01571 K11367 - gmx:100808039 2680.59