Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01520 ATGGACAAACATTCTGGGGATTCTATGTCAGCTCGTGGTACTGCAGGTCCATCGGAGATTTATTCTTCTAATATTGCTAAAAGAATGGGAAGTAATGCATGGGGGATACCACGTGGTACAGATGCATATCATGCATCAAGTGATGCTAGCTTGTTTTCTACTTCACTGCCTGTTCTTCCACATGGAAAGTTGAATTTTACTGATTCGGAGCATAATGGTCAATCAATCAATGATAGCTCGTCAATATTAAATAAAGTTCACAAAGAAGAAGAGGAACTTGATCCATTCGAAAATATTGAAACCAATGTAATCGGAAACATGCTTCCTGATGATGAAGAAGTGCTCTTAGCTGGAATTGCAGATGATTTTGATCTAAGTCGGTTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTGTTTGGAAGTGGAGGGGGCTTTGAAATGGATTTTGAACCACAAGATAGCATTAGTATTGGCATGTCAAAGATCAGCATATCTGATGGAGTTGCTCCGAATGGTATTGGTCATTATGCCCTACCGAATGGTCTGGGAACAGTGGCTGGGGAGCATCCCTATGGGGAGCATCCATCAAGGACTTTATTTGTCCGAAACATCAATAGTAATATTGAGGATTCTGAATTAAGATCACTATTTGAGCAATACGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGACATTCGAGCAGCTCGAACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCATCAGAAAAGGATATTAATCAGGGAACTCTTGTAGTGTTTAATCTAGATCCATCTGTTTCAAATGATGATCTTCGTCAAATATTTGGGGCTTATGGGGAGGTGAAAGAGATCAGGGAAACGCCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGGAGTGATATTGCTGGGAAACGCATCAAACTTGAACCTAGCCGCCCTGGTGGAGCTCGTCGAAACTTGATGCAACAACTGAGTCAAGAGCTGGAGCAGGATGAAGCACGGAGTTTTAGACATCAAGTGGGTTCACCATTGGTCAACTCTCCTCCTGGTAACTGGGCACAGTTTGGCAGTCCAGTTGAACATAACCCTTTAGTTTCGTTTAGCAAGTCCCCTGGTATGAGTCATGCCAGTCCAATGAACAGCAACCAGTTACCTGGACTGGCTGCAATTCTTTCCCCTCATGCATCAAACTCTGCAAAGATTGCACCTATTGGTAAGGACCCAGGAAGGATTACTGCTTCAAATACAATATTTGTGAACTCTGGATCAACACAAGGAGCAGGTTTTCAGCAGTCTCTGTCCTTTCCTGAGCAAAAAGTAAATGCTAGTCCTAGACCCATATCTAATTTGATTGAATCAAACTTAAGTTCATCAAACATTGGAACACTATCTGGTCCTCAGTTTCTTTGGGGAAGTCCAACTCCTTATTCAGAGCATGCGAGTACTTCTGCCTGGTCTTCATCTTCTATGGGGTTGCCATTCACACCTAGTAGCCAGAGGCAGGGTTTCCCATATGCCAGCCAACACAGCTCTTTTCTTGGTTCCCATTCCCATCATCATGTAGGATCTGCACCTTCTGGTATTCCTCTTGATAGGCAGTTGAGCTACTTCCCAGAGTCTCTGGAAACCTCTTTCGTGAATCAAGTTGCATTTGGGAATATGAATCGCAATGATGGAAGTTTTATGATGAACATGGGTGCCCGTGCAGCTGTAGGAGTTGGAGTTGGCCTTCCAGGAAATACGACTGAAATTGGCTCACCTAGTTCTAGAATGATGTCATTGACTAGGCGTGGTTCCTTGTTCCTTGGAAATGGTTTTTATTCTGGAGCAGGAGTAACAAACAATGAAGGATTAGCTGAACATGGTTGGAATCGGCGACCTGAAAATAGTGGGAACCAAATTGATAGCAAGAAGCAGTATCAGCTTGATCTAGACAAAATTATCAGTGGGGAAGATACTAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACCTCAAAAATGCTGCTGGCTGCAATTGATGAGAATCACCAGGGCACTTATGACTTTCTCTACTTACCAATTGACTTTAAGAACAAGTGCAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCGCACATAATTCCCTTCTATAAGGCGTTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCGTTATTGGCATATGCACGAATCCAGGGAAAGGCTTCACTTGTGACACACTTTCAGAATTCAAGCTTAATGAATGAGGACAAGCGTTGCAGGCCAATTCTTTTTCACTCAGAGGGCCAAGAGACTGGCGATCAGGAATCATTCCTTTCCAGTAATTTGAACATATGCATTCGACAACCGGATGGATCATACTTGGGTGATTTATTGGAGAGCCCTAAGGGCAATTTCGACGAGAAGCAAGAGAAAATTTAACTTTTAGCTAGATGTCCTTCTAGTCACAGGAAATGGCTGGGAGTGCTAACCGGTGCATAGCTAATCTTAAGATTGTACAAAGTTGATTCATTAAAATGAAAAAAAAAAGTGTGTAAAGGTGAAGTAGAA 2706 0.418 MDKHSGDSMSARGTAGPSEIYSSNIAKRMGSNAWGIPRGTDAYHASSDASLFSTSLPVLPHGKLNFTDSEHNGQSINDSSSILNKVHKEEEELDPFENIETNVIGNMLPDDEEVLLAGIADDFDLSRLPSQLEDLDENDLFGSGGGFEMDFEPQDSISIGMSKISISDGVAPNGIGHYALPNGLGTVAGEHPYGEHPSRTLFVRNINSNIEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARSFRHQVGSPLVNSPPGNWAQFGSPVEHNPLVSFSKSPGMSHASPMNSNQLPGLAAILSPHASNSAKIAPIGKDPGRITASNTIFVNSGSTQGAGFQQSLSFPEQKVNASPRPISNLIESNLSSSNIGTLSGPQFLWGSPTPYSEHASTSAWSSSSMGLPFTPSSQRQGFPYASQHSSFLGSHSHHHVGSAPSGIPLDRQLSYFPESLETSFVNQVAFGNMNRNDGSFMMNMGARAAVGVGVGLPGNTTEIGSPSSRMMSLTRRGSLFLGNGFYSGAGVTNNEGLAEHGWNRRPENSGNQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVALLAYARIQGKASLVTHFQNSSLMNEDKRCRPILFHSEGQETGDQESFLSSNLNICIRQPDGSYLGDLLESPKGNFDEKQEKI 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01520 858 CDD RRM1_MEI2_like 198 274 IPR034453 -
Bach12g01520 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Bach12g01520 858 FunFam Protein MEI2-like 1 283 378 - -
Bach12g01520 858 Pfam RNA recognition motif 2 698 794 IPR007201 -
Bach12g01520 858 Gene3D - 188 282 IPR012677 -
Bach12g01520 858 CDD RRM3_MEI2_like 701 786 IPR034454 -
Bach12g01520 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Bach12g01520 858 PANTHER RNA RECOGNITION MOTIF-CONTAINING 61 816 - -
Bach12g01520 858 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Bach12g01520 858 CDD RRM2_MEI2_like 283 353 - -
Bach12g01520 858 SMART rrm1_1 285 353 IPR000504 GO:0003723
Bach12g01520 858 SMART rrm1_1 200 268 IPR000504 GO:0003723
Bach12g01520 858 SMART rrm1_1 700 776 IPR000504 GO:0003723
Bach12g01520 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Bach12g01520 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Bach12g01520 858 SUPERFAMILY RNA-binding domain, RBD 700 785 IPR035979 GO:0003676
Bach12g01520 858 Gene3D - 283 383 IPR012677 -
Bach12g01520 858 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01520 Bach-Chr12 10791137 10796691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01520 194 423 Eukaryotic Initiation Factors Gene Family AT1G71770 25.758 2.52e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01520 - - gmx:100812324 1379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g01520 12 10791137 10796691 Bach12g01520 12 10791137 10796691 ECH