Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01509 ATGGTTCTAGGCATGGAGCTTCCAAATCAAGCATCAGAAGGATCTTCTATTCAGAAGAAAACTGGAAGAGGGAAAATTGAAATCAAGCGGATCGAGAACACCACGAATAGACAAGTTACTTTTTGTAAGAGACGCAATGGGTTGCTGAAGAAAGCTTATGAATTATCTGTTCTGTGTGATGCTGAAGTTGCTCTCGTTGTCTTCTCAAGCCGTGGACGCTTATATGAGTATGCTAACAACAGTGTTAGAGGAACTATTGAAAGGTACAAGAAAGCATGCGCTGCTTCCTCAAATACAGAATCTGTGGCTGAAGCCAATACACAGTTTTACCAGCAAGAGTCATCTAAATTAAAAAGACAAATTCGAGAGATTCAGAATTTGAACAGGCACATACTTGGTGAAGCTCTTAGCACTTTGAGTCTTAAGGAACTAAAGAACCTTGAGGGAAGATTGGAGAAGGGTTTAAGCAGAGTTAGATCCAGAAAGCATGAAACTTTGTTTGCTGAAGTCGAGTTCATGCAAAAGCGGGAAATGGAACTGCAAAACCATAACAATTATCTGCGAGCAAAGATAGCTGAACAGGAGAGAGCACGAGAACAGCAAGCAAATTTGATGCCAGCAACTGTGTGTGAATCCATACCACCTTCACAATCATATGACAGAAATTTCTTCCCAGTAAATCTCTTAGATTCCAATCATCAGTATTCTCGTCCAGACCAGACTGCTCTCCAACTTGTTTGATGAGCAGAACATCCACTGGAAATTGGGTGGAGAGCCATTTCTACCTCAGCTTTTCTATGGCTTCATATGTCTAAATAGTTGCTTGCAAGTGGTGGAGAGCTAGTGATCATGTATGAGTTTGCTGAATGATTACTGCCTTTAGAGTTTCCAATAGCCACTAGGGTTCTTCAAAACAATGAACATGAAGAAGGGCCACCATCAATTTGCAGTCATATATACTTCATAGAATTGTTTTTATTATGTACCTTTTAACAGGAACTACAGTGTCTATTTCACTCTCCTTGTATGTTTGTTTGCGCCATCTAATTTTCATTTAGAGCAAGCTTTA 1069 0.3985 MVLGMELPNQASEGSSIQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKACAASSNTESVAEANTQFYQQESSKLKRQIREIQNLNRHILGEALSTLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREMELQNHNNYLRAKIAEQERAREQQANLMPATVCESIPPSQSYDRNFFPVNLLDSNHQYSRPDQTALQLV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01509 246 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Bach12g01509 246 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Bach12g01509 246 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Bach12g01509 246 Gene3D - 33 129 IPR036879 GO:0003677|GO:0046983
Bach12g01509 246 CDD MADS_MEF2_like 22 98 IPR033896 GO:0000977|GO:0045944
Bach12g01509 246 FunFam agamous-like MADS-box protein AGL11 33 116 - -
Bach12g01509 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677|GO:0046983
Bach12g01509 246 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677|GO:0046983
Bach12g01509 246 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
Bach12g01509 246 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach12g01509 246 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677|GO:0046983
Bach12g01509 246 SUPERFAMILY SRF-like 22 97 IPR036879 GO:0003677|GO:0046983
Bach12g01509 246 Coils Coil 107 130 - -
Bach12g01509 246 Pfam K-box region 105 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach12g01509 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 23 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01509 Bach-Chr12 10716986 10723468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01509 11 246 MADS-box Gene Family AT3G58780 69.136 1.17e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach12g01509 K-box 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01509 K09264 - gmx:100782733 410.609