Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01467 ATGCAGCAACCAGCATCCGGAGTTGTCTCATCTATGATGCCGCCCATGGGGTCAATTCCATCGGATCAGCAGAACCAGCAGCACGCGCCGGCGCCGGCGCCGTCGCAGCAACAGTGGATGATGATGCAGTCACAGCATCAGCAGCAAGTGCCTCCACCTGCGGGGTGGGCTCCGCAATCAGTTCCGCCTCCTCAGGCACTTCATATGCAGCAGCCGTTGGCGCAACAATATGCCACCGGGCAGAATGCTAGCTCTGGTGAGATCGGGTCGCTCTGGGTTGGCGACTTGCAGCAGTGGATGGATGAAAACTACCTGGTCAACTGCTTTGCTTATACTGGCGAGGTAATTGCTGCTAAGGTCATTCGTAATAAGCAAACTGGCATACCAGAGGGTTATGGTTTCATTGAGTTTAGAACACATGCTGCTGCGGAGACAGTCTTGCAGACATACAATGGCACGTTGATGCCAAATTCTGATCAGAATTTTAGAATGAACTGGGCCACACATGGTCCTGGTGAGAAGCGACAGGATGATGGTCCGGATTATACTATCTTTGTTGGTGATTTGGGTGCTGATGTTACTGATTATGTGCTACAAGAAACTTTCCGAGCTTATTATTCATCAGTGAAGGGAGCAAAGGTGGTAATTGATCGAATCACTGGACGGTCAAAGGGCTATGGGTTCGTTAGATTTGGCGATGAAAGTCAACGAGTGCGTGCATTAAGTGAGATGAATGGTGTGTACTGTTCTACAAGACCCATTCGGGTTGGACCTGCTGCCAACAAGAAACCCATAGGCAGTCAGCAATATCAGACAGCTTCATACCAGAATACTCAAGGAAACCAGGGCGAGAATGATCCTACTAATACAACAATATTCGTTGGGAATTTGGACCCTAGTGTTTCAGATGACTTGTTGAGGCAAGTCTTTGGCCAATTTGGTGAGCTAGTTCATCTGAAAATACCTGCAGGGAAGCGCTGTGGTTTTGTTCAGTTTGCTAATAGATCATGTGCTGAGCGAGCATTGTCAGTTTTGAATGGAACGCCATTAGTAGGACAGAGCATTAGGCTTTCGTGGGGGCGTAGCTCATCAAACACGCAGTTCCTGACAGATCAGGTCCAGTGGAATGGTGCAGATTATGGCTATGCACGAGGCTATGATCCATATACATATGCTCCTACTACGCAAGATCCTAATATGAGTTATGGAGGTTACCCTCAATATGGGAATTACCAGCAGCCTCAACAGTGAACAGTCGTTGTGCTGAACTTGGAAGCAGGCCAATCCTTGTTCTAGTGCTCAAGCTGCTGATTTACTTTACCCTTTCAGTGAGAGCAAATAATTTCATATCGTGTTATTCTTGGATTATTCTGATATTCTTGTCTTTTATAACTATGCTTTGAACTTAGTTGATTGAACTAGTAAAGAGTGATATTAGAATGAAATTGGATTGATGATAATGGATGGTTTGAAATTATGCGCTTCGAATTTAA 1493 0.4601 MQQPASGVVSSMMPPMGSIPSDQQNQQHAPAPAPSQQQWMMMQSQHQQQVPPPAGWAPQSVPPPQALHMQQPLAQQYATGQNASSGEIGSLWVGDLQQWMDENYLVNCFAYTGEVIAAKVIRNKQTGIPEGYGFIEFRTHAAAETVLQTYNGTLMPNSDQNFRMNWATHGPGEKRQDDGPDYTIFVGDLGADVTDYVLQETFRAYYSSVKGAKVVIDRITGRSKGYGFVRFGDESQRVRALSEMNGVYCSTRPIRVGPAANKKPIGSQQYQTASYQNTQGNQGENDPTNTTIFVGNLDPSVSDDLLRQVFGQFGELVHLKIPAGKRCGFVQFANRSCAERALSVLNGTPLVGQSIRLSWGRSSSNTQFLTDQVQWNGADYGYARGYDPYTYAPTTQDPNMSYGGYPQYGNYQQPQQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01467 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 76 366 - -
Bach12g01467 416 SMART rrm1_1 183 257 IPR000504 GO:0003723
Bach12g01467 416 SMART rrm1_1 291 358 IPR000504 GO:0003723
Bach12g01467 416 SMART rrm1_1 90 165 IPR000504 GO:0003723
Bach12g01467 416 MobiDBLite consensus disorder prediction 16 54 - -
Bach12g01467 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 355 IPR000504 GO:0003723
Bach12g01467 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
Bach12g01467 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 254 IPR000504 GO:0003723
Bach12g01467 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Bach12g01467 416 Gene3D - 267 368 IPR012677 -
Bach12g01467 416 FunFam polyadenylate-binding protein RBP45 273 370 - -
Bach12g01467 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Bach12g01467 416 FunFam Polyadenylate-binding protein RBP45C 172 266 - -
Bach12g01467 416 Gene3D - 89 167 IPR012677 -
Bach12g01467 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Bach12g01467 416 Gene3D - 168 266 IPR012677 -
Bach12g01467 416 MobiDBLite consensus disorder prediction 1 65 - -
Bach12g01467 416 CDD RRM2_SECp43_like 181 260 - -
Bach12g01467 416 CDD RRM1_SECp43_like 90 170 - -
Bach12g01467 416 FunFam Polyadenylate-binding protein RBP47B 88 168 - -
Bach12g01467 416 SUPERFAMILY RNA-binding domain, RBD 180 363 IPR035979 GO:0003676
Bach12g01467 416 SUPERFAMILY RNA-binding domain, RBD 55 171 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01467 Bach-Chr12 10391393 10395655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01467 88 359 Eukaryotic Initiation Factors Gene Family AT2G23350 29.856 4.76e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01467 - - cave:132173678 551.592