Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01391 CACATCCTCTGTTTTCATCGAAAATCCATTTGCTTAGTTTCCTTGCTGGGTTTGCTAGATAATCTGGTTGGCTTTTTGATTGATGCACAAAAGATCCGATGCTCTTAGATCGATTTTGACAAGACCCACTTCATATCTGATCGGAGCACCAACTGGGTTCTATCTGAATTTTGAGATAAGAATAGATGGAATCTGATCTTGGCAAGCTCTTCATTGGAGGAATTTCCTGGGATACTGATGAGGAGCGTCTTAAAGAATATTTTGGGAAGTACGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAACAGGTCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCTGACCCTGCTGTCGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCATACTATTAATCGGCAATCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGACGCACAAAAAAGATTTTCGTTGGAGGTTTACCATCAACTATCACTGAAAGTGACTTTAAGAAGTATTTTGATCAGTTTGGAACAATTACTGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATGCAGAAGAAGCAGTGGACAGAGTTCTGTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGGCTGAACCGTAGCCCATTGGTAGGATATAACTATGGTTTGGGTAGGGGCAATAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATGAGTCCAGTTGGAGGTTATGGAGTCAGGATGGATGGTAGGTTTAGTCCAGTAACTAGTGGTAGAAGTGGGTTTTCCCCATTTGGCACAACCGCTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAGGCTATGGTGGGACTTCCAATTATGGGAGTAGTCTAGGATATGGTCGGATATTTAGTCCTTTCTATAGTGGCAACTCAAGTAGGTATACTACTCCTATTGGCTACAGTGGGGGTAATGGGAGAGGAGATTCTCTTATGAACTCAACTTCTCGAAACCTCTGGGGAAATGGGGCCCTGAATAATGCCAATAACCCAGTCAGCCCAGGTGCTTACATGGGATCTGGAAGTGGGGCTTTGGGCATTACACTTGGAAATAATGGCACAAACTGGGCTCAATCCCTTCCAAGCCAGGGTGGAGGGAATGCTTCTGGGTATGCTACTGGGAATAGTGTTTATGGAGGTGGAGATAGCAGCTTTGGGTTAGGAGGAGGTGGTTATGGAAGATCTAGCAGTACTGGTGTAACTCCACCCTCTACATTTTCTGCATCAACTGGTGGTTTTGAAGCGTCCTATGGGGACTTGTACCGCAGTGGTTCAGTTTATGGTGACTCAACTTGGCGATCTGCTGCTTCTGACCTAGATGGTTCAGGCTCATTTGGTTATGGACTTGGTGGTATAGCATCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAGTGTTACGAATAGACAATCTAATAGAGGTACGAATTTCTTTGGCTGCATCAAGTAA 1634 0.4437 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHTINRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDAEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGLNRSPLVGYNYGLGRGNSYLNSYAQGFNMSPVGGYGVRMDGRFSPVTSGRSGFSPFGTTAYGMGVNLDSGLSPGYGGTSNYGSSLGYGRIFSPFYSGNSSRYTTPIGYSGGNGRGDSLMNSTSRNLWGNGALNNANNPVSPGAYMGSGSGALGITLGNNGTNWAQSLPSQGGGNASGYATGNSVYGGGDSSFGLGGGGYGRSSSTGVTPPSTFSASTGGFEASYGDLYRSGSVYGDSTWRSAASDLDGSGSFGYGLGGIASDDPVKSSEGYIGNYSVTNRQSNRGTNFFGCIK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01391 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Bach12g01391 482 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bach12g01391 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Bach12g01391 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bach12g01391 482 SUPERFAMILY RNA-binding domain, RBD 104 206 IPR035979 GO:0003676
Bach12g01391 482 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Bach12g01391 482 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bach12g01391 482 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bach12g01391 482 MobiDBLite consensus disorder prediction 80 105 - -
Bach12g01391 482 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bach12g01391 482 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Bach12g01391 482 CDD RRM2_Hrp1p 107 184 - -
Bach12g01391 482 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Bach12g01391 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bach12g01391 482 Gene3D - 103 189 IPR012677 -
Bach12g01391 482 Gene3D - 6 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01391 Bach-Chr12 9871072 9873450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01391 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 9.89e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01391 K14411 - gmx:100805131 796.964