Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01380 ATGGCCGTGTCTTCCGTCTCTGCAGCATTAGTTCCTTCGCTCTCACTCTCGAGTTCTTCTTCACTACGTTCCAAGCCAAAGGTTTCTTCTTTTTACATGCTTTCTGATAACACCTTGAAGCTCAGATGTTCAAAACCCCTGCAATCATCAACTAGGGTTTATGCTGCTCCCGACGTGTTGAATTCTCCCGAATCCGTAGACCCACCTCCAGAAAACCCAGATGAATATGAACCCACCACCATTGAGGTTGGAGACTCGGAGACTCCTGGTACCTCGCCAATAAGCATTGGTGCAGACATGGACACGATGGCACCAAAGCAGAAAATCAGAATTAAACTTCGATCTTACTGGGTGCCCCTGATAGAGGATTCGTGCAAGCAGATAATGGACGCTGCAAGGAATACCAATGCAAAGACCATGGGTCCTGTACCATTGCCAACCAAGAGGCGTATTTACTGTGTTCTTAAATCCCCACACGTAAACAAGGATGCTCGGTTCCATTTTGAGATCAGAACTCATCAGCGTCTCATTGATGTCTTATATCCTACTGCCCAAACCATAGATTCTTTGATGCAACTTGATCTTCCTGCGGGTGTTGATGTAGAGGTCAAGCTATAAAGTTATCCGAGTTTGCTGAAATCTGAGTGAACTTCAGACTGCTACTAATAGTTAAAAAATATAAACTATTGAATGAGTTAGTTGATATATTTCACTTCTTTAATATTGACTTTTTC 734 0.4319 MAVSSVSAALVPSLSLSSSSSLRSKPKVSSFYMLSDNTLKLRCSKPLQSSTRVYAAPDVLNSPESVDPPPENPDEYEPTTIEVGDSETPGTSPISIGADMDTMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKRRIYCVLKSPHVNKDARFHFEIRTHQRLIDVLYPTAQTIDSLMQLDLPAGVDVEVKL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01380 205 Hamap 30S ribosomal protein S10 [rpsJ]. 106 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach12g01380 205 MobiDBLite consensus disorder prediction 1 26 - -
Bach12g01380 205 MobiDBLite consensus disorder prediction 53 99 - -
Bach12g01380 205 SUPERFAMILY Ribosomal protein S10 108 205 IPR036838 -
Bach12g01380 205 ProSitePatterns Ribosomal protein S10 signature. 132 147 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bach12g01380 205 Pfam Ribosomal protein S10p/S20e 110 204 IPR027486 -
Bach12g01380 205 FunFam 30S ribosomal protein S10 103 205 - -
Bach12g01380 205 NCBIfam 30S ribosomal protein S10 107 204 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach12g01380 205 Gene3D Ribosomal protein S10 domain 97 205 IPR036838 -
Bach12g01380 205 SMART Ribosomal_S10_2 110 204 IPR027486 -
Bach12g01380 205 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 36 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach12g01380 205 PRINTS Ribosomal protein S10 family signature 143 158 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach12g01380 205 PRINTS Ribosomal protein S10 family signature 164 178 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bach12g01380 205 PRINTS Ribosomal protein S10 family signature 108 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01380 Bach-Chr12 9739844 9742643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01380 107 205 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 31.000 9.66e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01380 K02946 - qsu:111986192 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g01380 12 9739844 9742643 Bach12g01380 12 9739844 9742643 ECH