Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01250 ATGGAAGATCAGTCTGTTTTAGGTGGTGGAGTTCTTGTTAGTTTTGTCAGGGAAGAAGAGGAAGATGAGTTTCGCAGTTGCTGTGGAGATGAAGATGTATGGAAAGAAAGTGAGGAGCGGGTGAAGGAAGAGTTGAAGGATGACCTCGATGAATTCTCAGTAAAAATGTTCTTCAAGGGGTTGTCAATTGTAGGGGTTGAAAATTCCAATTCTGGGTTTTCTGGAATTGGGGTGGTCATGGAAAGACCACCTGGTATACCTGCAATTCGGGTACAGAAAAAGCTTGATCTCTATGTGGAGGAGTCTGTAGCTAACTACTTGGCTTTCATGGATGGCTTGGCGGAAGCTGTGCAAAATAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAGTTGTTGTACAATCAGATAATGTTAGAGAAAAATCTTGATATGCCACTTTTAATCGCACTGAGAGAAAGGATTCTGGAACATTCCAATAACTTAGAAGCTTTTGTTCTGAATCTTGTTCCCAGTATTGATCTTGAGCAGCCACTGCAATTAGCAAAAGTAGCTGTTGGACTTGTCTCTTTTCCCATAACTGGTGAGAGATTACTTGAAAGCTGTTCTATTTGTTGTGAGGATAAGCCATTGCCAATTGTGATCACTATGAAATGTTCGCATAAGTTTTGTTCACATTGCTTGAGGGCCTATGCTGATGGAAAATTACAGTCTTGTCAAGTCCCCATAAAATGCCCTCAACCAGGATGCAAATATTACATCTCTACCACAGAGTGCAGGTCTTTTCTTCCATTTGCCTCTTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGTGAATGTTTGCCACTCAGATAGAATATACTGCCCATTTCCTGGTTGTTCTGTTCTTCTTGATCCTCGTAAATGTTTATCTGCTAGGGCTAGCTCTTCTAGCCAGTCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTCAAAGGTTTATCTGTGTAGACTGTGAGGTTCCTTGGCATTCTTCCATGACCTGTGAAGAGTACCAAAATCTACCAGAGGAGGAGGGAGATGCTTCTGACATAACCTTATATCGACTTGCTCAAAATAAAAGATGGACACGTTGTCAGCAGTGTCGCCGAATGATTGAGCTCACCCAAGGTTGTTACCTCATGACATGCCGGTGCGGTCATGAGTTCTGCTATTCTTGTGGTGCAGAATACAGGGATTCCCAGCAGACATGTCAATGTGCATTCTGGGATGAAGACAACTCTGAAGACTCGGTGACTCATTCGCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTTAATTCTCTCCCAATGATCACAGATGCTTATACTGACCAAGAAAGATCACAGCTTCAACTTATACAAAGATTCCTAGCTGGGGGTTTCAGCCTGGCTGATCATCATCCTTACCAATCTCCGCCCCGCTGTACAGATTCCTACGTAGATGCCATGAAGGATCTCCATCAGCTTCCATGGCTTGAGAGGTTTGTGTCTGTGATAAGTGACAACTACTACGAAGACTATATTCAATGA 1551 0.4275 MEDQSVLGGGVLVSFVREEEEDEFRSCCGDEDVWKESEERVKEELKDDLDEFSVKMFFKGLSIVGVENSNSGFSGIGVVMERPPGIPAIRVQKKLDLYVEESVANYLAFMDGLAEAVQNKIRRVYAFTDSELLYNQIMLEKNLDMPLLIALRERILEHSNNLEAFVLNLVPSIDLEQPLQLAKVAVGLVSFPITGERLLESCSICCEDKPLPIVITMKCSHKFCSHCLRAYADGKLQSCQVPIKCPQPGCKYYISTTECRSFLPFASFESLEKALAEVNVCHSDRIYCPFPGCSVLLDPRKCLSARASSSSQSDNSCVECPVCQRFICVDCEVPWHSSMTCEEYQNLPEEEGDASDITLYRLAQNKRWTRCQQCRRMIELTQGCYLMTCRCGHEFCYSCGAEYRDSQQTCQCAFWDEDNSEDSVTHSLQESEQWAWETFNSLPMITDAYTDQERSQLQLIQRFLAGGFSLADHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01250 516 Pfam Reverse transcriptase-like 68 171 IPR002156 GO:0003676|GO:0004523
Bach12g01250 516 Gene3D - 338 493 - -
Bach12g01250 516 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Bach12g01250 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 109 467 IPR031127 GO:0004842|GO:0016567
Bach12g01250 516 SMART ibrneu5 269 341 IPR002867 GO:0008270
Bach12g01250 516 SMART ibrneu5 358 410 IPR002867 GO:0008270
Bach12g01250 516 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Bach12g01250 516 FunFam RBR-type E3 ubiquitin transferase 339 464 - -
Bach12g01250 516 FunFam RBR-type E3 ubiquitin transferase 54 189 - -
Bach12g01250 516 FunFam RBR-type E3 ubiquitin transferase 198 282 - -
Bach12g01250 516 Gene3D - 57 187 IPR036397 GO:0003676
Bach12g01250 516 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Bach12g01250 516 Coils Coil 35 55 - -
Bach12g01250 516 Pfam IBR domain, a half RING-finger domain 362 410 IPR002867 GO:0008270
Bach12g01250 516 Pfam IBR domain, a half RING-finger domain 278 341 IPR002867 GO:0008270
Bach12g01250 516 CDD Rcat_RBR_unk 367 403 - -
Bach12g01250 516 SUPERFAMILY RING/U-box 356 418 - -
Bach12g01250 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 281 IPR013083 -
Bach12g01250 516 CDD BRcat_RBR_unk 283 344 - -
Bach12g01250 516 SUPERFAMILY RING/U-box 201 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01250 Bach-Chr12 8711155 8714805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01250 88 401 C3H Transcription Factor Family AT2G19610 27.187 2.39e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01250 - - gmx:100783040 852.818