Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01152 ATGGAAGAAGCTCTATCTGAGATTATCTCTTCAGGATTTTCACCAACTGGGTCTCTGATAAATCTATTGATTCAAATCTCCAATGAAGTTGCCTCCATTGAAAAGTTCCCAAGTGTGCATGTTAGGATTGTTTCATCCATGATAAGGAGGGTGAAGCTTCTTTCTTCTTTGTTTGATGATATTCAAGAAACAGATACCCCACTTCCTCCTTCTTCAGTCATTTGTTTCACAGAGCTCTTCTCTGTGATTAGAAGAGTGAAGTTTTTGATTCAAGAGTGCAAGGATAGCAGCTCTCTTTGGGGTCTTATCCAGTTAGAGTTCATCTCCAACAAATTTTATGTGCTGGTGAAAGAGATGGGAAGTGCTCTTGATATCCTTCCTCTGAGCTTGCTTAATATAACAGCAGATGTAAGAGAGCAAGTGGAGCTTCTGTACAAACAGGCAAAAAGGGCTGAGTTGTTTATTGACCCTCGAGAGCTTCAAAGAAGAGAACAGCTTCTCCAAGTAATGGCCAACAATAATGTACTAAACAAGAAGAACAAGGGCTATGTTGACTTCGGAAAAATGCAAGAAATATTAAGCAATATCGGTTTGAGAACGCCGTCTGATTATGATGGAGAAGTATCAAAGCTAGAGGCTGAAGCTCAGAGACAAGCAGGCACGGGGGGATTAATCGTTGTCTCCAATATAAACAATCTCATAACTGTGGTTACATACTCCAAATCCATGATATTCAGAGATGAAGAAAATGCAGGAGACAGAGAAGAGTGTAAGCCATTATCTGCATATCTCTATAAACAAAATGATACATCTTCATATTCTTTGTCTGTGATACCTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGATTTAATGAGAGACCCAGTGATTGTATCATCTGGGCATACTTATGATCGTATTTCAATTGCACAATGGATCAACTCAGGCCATCACACTTGTCCCAAAAGTGGGCAAAGGTTAATTCACACAGCTCTAATACCCAACTATGCATTGAAGAGTCTTGTCCAGCAGTGGTGCCATGAAAATAATGTCCCAGTGAATGAATCCTCAGCCTCTGAGGGAAACAATAACAAGAATAATTTGGGTGAGAATGCTGTTGATCATATTTCTGCAAATAAAGCTGCTAAAGATGCTGTCAAAATGACTGCAGAGTTTCTAGTTGGAAAATTGGCAACTGGGTCACCTGATATCCAGAGACAGGCTGCATATGAACTGAGATTACTTGCAAAAACTGGTATGGATAATAGAAGAATTATAGCTGAGGCAGGCGCAATTCCCTTTTTAGTAACATTACTTGGTTCCAATGATCCAAGAATCCAAGAGCACGCAGTCACAGCCTTCTTTAACCTTTCCATCTTCGATAACAACAAGCTTTTGATCATGGCAGCTGGAGCGGTTGACAATATAGTGGAAGTGCTTGAGTCGGGAAAAACAATGGAGGCAAGAGAAAATGCAGCAGCAGCCATCTTTAGCCTGTCTATGGTAGATGACTTTAAAGTAACAATTGGAGCTCGTCCAAGGGCCATACCTGCCTTAGTTAGACTCCTGAGAGAAGGCACACCTATTGGGAAAAAAGATGCTATAGCTGCACTTTTCAATCTCGCAGTTTACAATCCAAACAAGGTAAGTATTGTTTATGCTGGGACGGTTCCTTTGCTTATAGACTTGCTGATGGATGATAAGGCTGGCATAACAGATGATGCCCTGGCAGTACTTGCTTTGCTTCTGGGTTGCTCTCAAGGGCTAGAACAAATTGGGAATAGCAAAGTATTGGTGCCTCTTCTTATTGATCTTTTAAGATTTGGGTCAGCTAAAGGGAAGGAGAATTCAATAACTTTATTACTAGGATTGTGCAAAGAAGAAGGTGAGTTGGTGGCAAGGCGCCTTTTGGCCAATCCGCGAAGTATTCCTTCTCTTCAAAGCTTGGTTGCTGATGGTTCTTTAAGAGCTCGTAGAAAGGCCGGTGCCCTACTTAGACTGCTCAATAGGTGCTGTTCTCAATCTCGTAATTCTGTTTGA 2046 0.4096 MEEALSEIISSGFSPTGSLINLLIQISNEVASIEKFPSVHVRIVSSMIRRVKLLSSLFDDIQETDTPLPPSSVICFTELFSVIRRVKFLIQECKDSSSLWGLIQLEFISNKFYVLVKEMGSALDILPLSLLNITADVREQVELLYKQAKRAELFIDPRELQRREQLLQVMANNNVLNKKNKGYVDFGKMQEILSNIGLRTPSDYDGEVSKLEAEAQRQAGTGGLIVVSNINNLITVVTYSKSMIFRDEENAGDREECKPLSAYLYKQNDTSSYSLSVIPNIPDEFRCPISLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHENNVPVNESSASEGNNNKNNLGENAVDHISANKAAKDAVKMTAEFLVGKLATGSPDIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSNDPRIQEHAVTAFFNLSIFDNNKLLIMAAGAVDNIVEVLESGKTMEARENAAAAIFSLSMVDDFKVTIGARPRAIPALVRLLREGTPIGKKDAIAALFNLAVYNPNKVSIVYAGTVPLLIDLLMDDKAGITDDALAVLALLLGCSQGLEQIGNSKVLVPLLIDLLRFGSAKGKENSITLLLGLCKEEGELVARRLLANPRSIPSLQSLVADGSLRARRKAGALLRLLNRCCSQSRNSV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01152 681 SUPERFAMILY RING/U-box 277 354 - -
Bach12g01152 681 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Bach12g01152 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Bach12g01152 681 Gene3D - 512 679 IPR011989 -
Bach12g01152 681 Gene3D - 364 511 IPR011989 -
Bach12g01152 681 PANTHER U BOX DOMAIN-CONTAINING 45 675 - -
Bach12g01152 681 SMART arm_5 462 503 IPR000225 GO:0005515
Bach12g01152 681 SMART arm_5 587 628 IPR000225 GO:0005515
Bach12g01152 681 SMART arm_5 380 419 IPR000225 GO:0005515
Bach12g01152 681 SMART arm_5 505 545 IPR000225 GO:0005515
Bach12g01152 681 SMART arm_5 421 461 IPR000225 GO:0005515
Bach12g01152 681 SMART arm_5 546 586 IPR000225 GO:0005515
Bach12g01152 681 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Bach12g01152 681 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Bach12g01152 681 CDD RING-Ubox_PUB 282 334 IPR045210 -
Bach12g01152 681 FunFam RING-type E3 ubiquitin transferase 487 674 - -
Bach12g01152 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 356 IPR013083 -
Bach12g01152 681 SUPERFAMILY ARM repeat 392 670 IPR016024 -
Bach12g01152 681 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Bach12g01152 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Bach12g01152 681 Pfam Armadillo/beta-catenin-like repeat 423 460 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01152 Bach-Chr12 8020913 8022958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01152 23 680 U-box Gene Family AT3G46510 37.952 1.06e-130 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01152 - - gmx:100793498 1030.39