Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01082 ATGGATCTAATTTCTGCTGCAAACAGCATCATTTGCTTATACTGCACACAAGTGAATTTGTGGATAGGAATGTTTGGATGGTTAAAATCCGCTGGGGGGCGATCATTCTGGGGAAACCTTTTTCGGAGGTGTTCAATGGAGAAAGAGTTGGTCGAATTGTACGAATCAGTGAAGAAGGCGGCGGATGCGGCGAGCTCCGGCGATAGCGAACATGAAGAAAGTCGGTGCATAGATGCGCTCGAGCAGCTCAAGAAATTCCCAGTGAATTATCAAATTCTCGTCTCCACCCAGGTGGGCAAACGTCTTCGACATCTCACAAAACATCCAAATAAGAAAATTCGGGCTTTTTCTGCTGACCTGATTGAGATATGGAAAGGCATTATTATCAAGGAAACAAGCAAAAATAAGAATGGGAGCTCAAATAATCATGCTGAGTCAGCTAGTGGTGAGACAGCTAAAGCTGAGAAGGTTCAGAAGACACCTCAGGTGAAGGTTGAGAAGGCTTCCAAGGTTGAGAAAATTGATAGGAATGGTACATCAAGCTCAGGAAATATAAAGACACAAATTGTGAATGTCAAAAGTGAGAAAGCTGATTCTGCGGCACATGTTAAGGTGGAAAAGATAGTTAAGGACGAGAAGCAAGTTTCTGGAGTGAAGAAAACGTCATCCAGCCCGGCTCCTCCGAAGCTGAAATATATGATTAAATCTAATGACGCAATGCGAGACAAGATAAGGGAAATGCTCCATGATGCTTTCTCCCGGGTTCCTGGAGAGGCTGATGAAGAAATCATGGATCAAGTTGATGCATGTGATCCTATTCGAGTTGCTGTTACAGTGGAATCTGTATTATTTGAAAAGTGGGGTCCATCTAATGGAGCTCAAAAGGTTAAGTATAGGTCCTTAATATTTAACCTTAAGGATCAAAATAACCCAGATTTCCGGAGACAAGTCCTAATGGGAGTTGTTAAGCCAGAGGCGCTGCTCAACATGACCACAGCTGAAATGGCTAGTGAGAGAAGGAAGAAGGAGAATGAGCAAATAAAAGAGAAAGCTTTATTTGACTGTGAGCGTGGAATGCAACCAAAAGCCACAACTGATCAATTTAAATGTGGCCGATGTGGTCAAAGAAAGACCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTTACATGCGTTGTCTGTAACAACCGTTGGAAGTTCTGTTAG 1227 0.4295 MDLISAANSIICLYCTQVNLWIGMFGWLKSAGGRSFWGNLFRRCSMEKELVELYESVKKAADAASSGDSEHEESRCIDALEQLKKFPVNYQILVSTQVGKRLRHLTKHPNKKIRAFSADLIEIWKGIIIKETSKNKNGSSNNHAESASGETAKAEKVQKTPQVKVEKASKVEKIDRNGTSSSGNIKTQIVNVKSEKADSAAHVKVEKIVKDEKQVSGVKKTSSSPAPPKLKYMIKSNDAMRDKIREMLHDAFSRVPGEADEEIMDQVDACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLIFNLKDQNNPDFRRQVLMGVVKPEALLNMTTAEMASERRKKENEQIKEKALFDCERGMQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01082 408 PIRSF TFIIS 45 408 IPR035100 -
Bach12g01082 408 Pfam Transcription factor S-II (TFIIS), central domain 237 354 IPR003618 GO:0006351
Bach12g01082 408 SUPERFAMILY Zinc beta-ribbon 346 406 - -
Bach12g01082 408 MobiDBLite consensus disorder prediction 133 169 - -
Bach12g01082 408 FunFam Probable Transcription elongation factor S-II 337 408 - -
Bach12g01082 408 ProSitePatterns Zinc finger TFIIS-type signature. 370 405 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bach12g01082 408 MobiDBLite consensus disorder prediction 149 169 - -
Bach12g01082 408 Pfam Transcription factor S-II (TFIIS) 368 406 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bach12g01082 408 SMART TFS2_5 53 130 IPR003617 GO:0005634
Bach12g01082 408 MobiDBLite consensus disorder prediction 133 148 - -
Bach12g01082 408 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 41 144 IPR035441 -
Bach12g01082 408 SMART Cys4_2 368 407 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bach12g01082 408 NCBIfam transcription elongation factor S-II 59 408 IPR006289 GO:0003676|GO:0005634|GO:0006368
Bach12g01082 408 Pfam TFIIS helical bundle-like domain 79 128 IPR017923 -
Bach12g01082 408 CDD TFIIS_I 54 128 - -
Bach12g01082 408 ProSiteProfiles TFIIS central domain profile. 240 363 IPR003618 GO:0006351
Bach12g01082 408 CDD Zn-ribbon_TFIIS 361 407 - -
Bach12g01082 408 Gene3D - 337 408 - -
Bach12g01082 408 Gene3D - 216 336 IPR036575 GO:0006351
Bach12g01082 408 SMART mid_6 238 346 IPR003618 GO:0006351
Bach12g01082 408 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 59 408 - -
Bach12g01082 408 ProSiteProfiles Zinc finger TFIIS-type profile. 366 406 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bach12g01082 408 ProSiteProfiles TFIIS N-terminal domain profile. 55 131 IPR017923 -
Bach12g01082 408 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 42 142 IPR035441 -
Bach12g01082 408 SUPERFAMILY Elongation factor TFIIS domain 2 222 338 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01082 Bach-Chr12 7571010 7574227 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bach12g01082 TFIIS_M 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01082 K03145 - gmx:100811982 547.354