Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01030 ATGGCGGTTGCTGAAAATGCTGGGGCCATAATCGGCTCCTCCAATCAAAATTTGGACAACAGTGTAGTATCGACGGACTCAACTGGACTGAATGAGCTGGAGAAATCGAAATCCAGAACTGGTTCCTTGGGAAATGGTATTGAAGCAAATGTTCAGCCCATCAACGGTGATCAGAATCTTAACGCGGTCTTTAACCACCAGGACAGAGTTGCGACGACTGTGTCAGTCCCCAACAGTAATTACAAGCCACAAATGGCTCAGATGCGAAATGGGTTCGACTCAAATGGGGTCCAAAACCAGCAGATAGTGGTAAACCATGGTGGTTATGGGATTAACCAGATGTCCAATGGGGTCATGCATGGAGAGAATGGTGGTGACAGTTTCAAGCGCGATATGAGGGATTTGGAAGAACTTTTGTCCAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCGCTTACAAATAATCTTGGATACTTAGGTGGTGGCGGGTTTGGCTTTCCTAATAATTTTGTACTGCACACTAATTATGGAAATGCTAATGGGAATCCTAACAGAAGGAGGAAGAATGGATATAATCAGGGAAAGCGAAGACTGAATCATAAAACAGATATGGAGAAGCGAGAAGAGATGACTAGGAGGACTGTCTATGTGTCTGATATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTAAACTGTGGCCAGGTTGTTGATTGTCGTGTTTGTGGGGATCCAAATTCTATTCTTCGTTTTGCTTTTATTGAGTTTACAGATGAAGATGGTGCAAGGGCTGCTTTGAACCTGTCCGGCACCATGCTTGGATATTACCCAGTAAGAGTGCTGCCATCAAAAACTGCCATTGCACCAGTTAATCCATCGTTTTTGCCCAGGTCTGAAGATGAGCGGGAGATGTGCTCAAGAACCATTTATTGTACAAATATTGACAGGAAGGTTTCACAGGCTGAGGTCAAACTTTTCTTTGAAACTCTGTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTTCCAACATTCAACTCGAATAGCTTTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCAGCTCTGAACTGTAGCGGTGTGATTTTGGGTACACTGCCAATAAGGGTAAGTCCATCAAAGACACCCGTCCGATCCCGTGCTCCTCGTACTACAATGCACTAA 1203 0.4472 MAVAENAGAIIGSSNQNLDNSVVSTDSTGLNELEKSKSRTGSLGNGIEANVQPINGDQNLNAVFNHQDRVATTVSVPNSNYKPQMAQMRNGFDSNGVQNQQIVVNHGGYGINQMSNGVMHGENGGDSFKRDMRDLEELLSKLNPMAEEFVPPSLTNNLGYLGGGGFGFPNNFVLHTNYGNANGNPNRRRKNGYNQGKRRLNHKTDMEKREEMTRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDRKVSQAEVKLFFETLCGEVQRLRLLGDFQHSTRIAFVEFTMAESAIAALNCSGVILGTLPIRVSPSKTPVRSRAPRTTMH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01030 400 SUPERFAMILY RNA-binding domain, RBD 302 393 IPR035979 GO:0003676
Bach12g01030 400 FunFam Polyadenylate-binding protein-interacting protein 10 306 384 - -
Bach12g01030 400 Pfam Ataxin-2 C-terminal region 139 153 IPR009818 -
Bach12g01030 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 388 IPR000504 GO:0003723
Bach12g01030 400 MobiDBLite consensus disorder prediction 179 199 - -
Bach12g01030 400 CDD RRM2_CID8_like 308 389 IPR034825 -
Bach12g01030 400 SMART rrm1_1 216 286 IPR000504 GO:0003723
Bach12g01030 400 SMART rrm1_1 313 384 IPR000504 GO:0003723
Bach12g01030 400 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 137 393 - -
Bach12g01030 400 MobiDBLite consensus disorder prediction 14 47 - -
Bach12g01030 400 FunFam Polyadenylate-binding protein-interacting protein 11 178 292 - -
Bach12g01030 400 CDD RRM1_CID8_like 214 292 IPR034823 -
Bach12g01030 400 SUPERFAMILY RNA-binding domain, RBD 191 291 IPR035979 GO:0003676
Bach12g01030 400 Gene3D - 176 292 IPR012677 -
Bach12g01030 400 Gene3D - 298 396 IPR012677 -
Bach12g01030 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 290 IPR000504 GO:0003723
Bach12g01030 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 279 IPR000504 GO:0003723
Bach12g01030 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 377 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01030 Bach-Chr12 7251176 7255155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01030 214 376 Eukaryotic Initiation Factors Gene Family AT1G34140 24.551 1.02e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01030 - - qsa:O6P43_014935 671.003