Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g01001 ATGGAAAAAAAGTTGATCATTCACGCCTCACCCATACCGGCCTCTGAGTTACTTTCCCTCACTGTTGCTACTATAGTAGATACTGTCAAAGCAGCCGATGGTGTTGTCATTCAGAAGGAAAATTTTAAGAAATTCTCAACTTACTTGGAGAATATCCCATTTATACTGAAAGCAATATCAAAGGAAGACCTACACTATTCAGAGAGCTGGAAAAATGCTGTGGAGGGTCTCAGCCGAGAGGTTAAAGTTGCTAAGCAGCTGGTCTCTGATTGCAGCAGTAAAAACAAGATTTATCTTTTAATCAATAGTAGAAAGATTGTGAAGCGATTGGAGCGTTGTACAAAAGATATTAGTCGGGCAATAAGCCTTATCCCATTGGCGTCTTCAGATGTTTCATATGGTCTAAGTAAACAGGTAAGCGATCTATGCCAGAAAATGTTGGATGCTGAGTATCAAGCAGCAGCAACAGATGAGGAAATTTTGGAAAAAATTGAGCTAGCAATACGTGAGGGCAATGCTGATCGATCTTATGCAAATCAGTTGCTAGCTTGTATTGCAGATGCCATCGGGATCTTTACTGAACATGCGGCTTTGAAGAGAGAATTTATTGAGTTGAAAAGTGAAATGGAAAATGCCAAGTCAAGAAAGGATATGGCAGAAGTTCTATATTTGGAGCAGGTTATTGCATTGCTTGAAAAGGCTGATTCTGTAACTTCCGCACAAGAGAAGGAGAAGAAGTATATCAAAAAGCGAAATTCTTTGGGAAGGCAACCATTGGAGCCTTTGCAATCGTTTTATTGCCCCATCTCTCTTGAAATTATGGTAGACCCTGTGGAGACTTCATCTGGGAAGACATTTGAGAGAAGTGCCATAGAGAAGTGGTTTGGAGAAGATAAGAGTCACTGTCCCTTGACCATGTTGCAGTTGGATACTTCTATTTTAAGGCCCAATAAGACTCTTCGACAGTCAATTGAAGAATGGAAAGATAGGAACACCATCATTTCCCTTTCTTCTATCAAATCCCAACTCCAAATGAGTGATGAAGAGGAAGTGATTCAATCCTTAGACAAACTTCAGGATCTATGCATGGAAAGAGAGTTGCATCGAGAATGGATAAAAATGGAGAATTACTTTGCAGTTCTTATTGGACTCCTTGGTGCTAAAAAACGTGAAATAAGGAAGCGTGTTCTTATCATTCTATCTTTGCTTGCAAAGGACAATGAAGGGAACAAGGAAGATATTGCAAAAGCAGATAATGCACTTGAATCAATTGTTCGCTCACTTGCACGCCAAATTGAGGAAAGCAAGTTAGCATTAGAGTTGCTGTTGGAATTATCCAGAAGTAATGCAGTGCGTGATCTCATAGGGAATGTTCAAGGAAGCATACTTCTCCTAGTGACAATGTCAAGAAATGATGACCCGGAAGTTGCCAGAAATGCACATGATCTGCTGGAGAACCTGTCCTTCCTCGATCAGAATGTCACAGAAATGGCAAAGGCAAACTGTCTCAAACCTTTGCTACGGAATCTTTGTGCAGGATCAGAAGACATGAAGATAACCATGACTGAAACTTTGTCAGAAATTAATTTGACTGACCAGAATAAATTATCTATAATGGAAGATGGGGTGCTGAGGCCCCTTCTTCAGTTGCTCTCAAACGATGATCTGGAAATCAAAAGAGTGGCTGTCAAAGCTCTCCAGCAGCTCTCAAGCTTGCCAGAGAATGGCCTGCGGATGATTAGGGAGGGTGTTGCTGGACCACTATTTGAACTGCTATATCGTCACAGTTTGCAGTCACCGGCTCTGGGCGAAGAGGTAGCTGCCACAATATTGCATCTTGCCATGTCAACCACTCACCAAAAAGCCGATGAAGGACAGATTTCATTGATAGATTCCCAGGAAGACATTTATAAGTTCTTCTCTCTTATTTCCTTAGCTGAACCAGACATACAAAGCAAGATTCTCAGAGCCTTCCAGGCAATGTGTCAGTCTCCCTCTGGTTTCACCATCAGAACGAGGTTGAGACAGCTCTCAGCTGCTCGAGTATTGATTCACTTGCTAGAGCTTGATAACCAACCAGTGAGAGCAAATGCAGTGAAGCTGTTCTATTGCTTGACAGAAGATGGAGATCACAGCAACTTTTCATCACATGTGACTGAAAGGTTCATTAAGGTTTTGCTTACCATCATTCATACTTCTGATGACCCAGAAGAAATGGTTGCTGCTATGGGTACTATCTCCAGACTTCCACAGGACCAACAAGTAACTCAGTGGCTTTTAGATTCGGGGGCACTTCAAACTGTTTTGGCTTGTCTTAAAGATAGGCATAAGCACGCCTCACATAAAAGGTATGTGACTGAGAACTCTGTCCAAGCTCTCTGCCGTTTTACTGTCTCAACAAATCTGGAGTGGCAGAAGAGGGTAGCTCAAGAAGGCATCATTCCCGTGCTGGTGCAATTGCTAATTTCTGGAACACCTTTGGCAAAACAAAGTGCAGCCATTTCAATCAAGCAGTTATCTGAAAGTTCATACAGCTTGAGCAAGCAAATAAAGAAACAGTTTCTTTTCAAATGCTGCTTCATAACCCAAGAAATTGGCTGCGAAGCACACCTAGGCACCTGTACAGTTGAGTCTTCATTCTGCATCATAGAGGCTAATGCTTTGGAACCCCTAGTGAGGATGCTTGCAGAACCAGATGCTGGAACATGTGAAGCTTCATTAGATGCACTATTGACATTGCTTAACAGTGAAAGACCGCAGAGTGGCAGTAAGGTAATTGATAATGCAAATGCTATTGCTCCGATGATAAGGTTACTGAGTCTTCCAGCTGCCAGGTTGCAGGAAAAAACTCTAATAGCCTTAGAACGAATTTTTCAAGTAGATGAGATAAAAGTTAAGTATAGATCTATGGCGACAATGCCCTTGGTGGAAATAACCCAGAATAGAGACAGTCGTTTCAGAAGTCTTTCCGCCAAAGTCCTTGCTCAATTGGAAGTACTTAATAAACAGTCATCTTATTTTTAA 3024 0.4163 MEKKLIIHASPIPASELLSLTVATIVDTVKAADGVVIQKENFKKFSTYLENIPFILKAISKEDLHYSESWKNAVEGLSREVKVAKQLVSDCSSKNKIYLLINSRKIVKRLERCTKDISRAISLIPLASSDVSYGLSKQVSDLCQKMLDAEYQAAATDEEILEKIELAIREGNADRSYANQLLACIADAIGIFTEHAALKREFIELKSEMENAKSRKDMAEVLYLEQVIALLEKADSVTSAQEKEKKYIKKRNSLGRQPLEPLQSFYCPISLEIMVDPVETSSGKTFERSAIEKWFGEDKSHCPLTMLQLDTSILRPNKTLRQSIEEWKDRNTIISLSSIKSQLQMSDEEEVIQSLDKLQDLCMERELHREWIKMENYFAVLIGLLGAKKREIRKRVLIILSLLAKDNEGNKEDIAKADNALESIVRSLARQIEESKLALELLLELSRSNAVRDLIGNVQGSILLLVTMSRNDDPEVARNAHDLLENLSFLDQNVTEMAKANCLKPLLRNLCAGSEDMKITMTETLSEINLTDQNKLSIMEDGVLRPLLQLLSNDDLEIKRVAVKALQQLSSLPENGLRMIREGVAGPLFELLYRHSLQSPALGEEVAATILHLAMSTTHQKADEGQISLIDSQEDIYKFFSLISLAEPDIQSKILRAFQAMCQSPSGFTIRTRLRQLSAARVLIHLLELDNQPVRANAVKLFYCLTEDGDHSNFSSHVTERFIKVLLTIIHTSDDPEEMVAAMGTISRLPQDQQVTQWLLDSGALQTVLACLKDRHKHASHKRYVTENSVQALCRFTVSTNLEWQKRVAQEGIIPVLVQLLISGTPLAKQSAAISIKQLSESSYSLSKQIKKQFLFKCCFITQEIGCEAHLGTCTVESSFCIIEANALEPLVRMLAEPDAGTCEASLDALLTLLNSERPQSGSKVIDNANAIAPMIRLLSLPAARLQEKTLIALERIFQVDEIKVKYRSMATMPLVEITQNRDSRFRSLSAKVLAQLEVLNKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g01001 1007 Gene3D - 862 1005 IPR011989 -
Bach12g01001 1007 Gene3D - 339 532 IPR011989 -
Bach12g01001 1007 SUPERFAMILY ARM repeat 879 997 IPR016024 -
Bach12g01001 1007 Gene3D - 533 634 IPR011989 -
Bach12g01001 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1007 - -
Bach12g01001 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Bach12g01001 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Bach12g01001 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Bach12g01001 1007 SMART arm_5 448 489 IPR000225 GO:0005515
Bach12g01001 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Bach12g01001 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Bach12g01001 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Bach12g01001 1007 SMART arm_5 406 447 IPR000225 GO:0005515
Bach12g01001 1007 SMART arm_5 490 530 IPR000225 GO:0005515
Bach12g01001 1007 SUPERFAMILY ARM repeat 337 489 IPR016024 -
Bach12g01001 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Bach12g01001 1007 Coils Coil 195 215 - -
Bach12g01001 1007 CDD MLKL_NTD 21 129 - -
Bach12g01001 1007 Gene3D - 635 858 IPR011989 -
Bach12g01001 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Bach12g01001 1007 CDD RING-Ubox_PUB 265 314 IPR045210 -
Bach12g01001 1007 SUPERFAMILY ARM repeat 503 853 IPR016024 -
Bach12g01001 1007 SUPERFAMILY RING/U-box 252 332 - -
Bach12g01001 1007 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Bach12g01001 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Bach12g01001 1007 Gene3D - 16 128 IPR036537 GO:0007166
Bach12g01001 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 338 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g01001 Bach-Chr12 7109662 7113331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g01001 263 1007 U-box Gene Family AT1G76390 27.525 1.94e-61 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g01001 - - gmx:100818273 1370.53