Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00890 ATGTGCTCGGATAAGACCGTCTCAAGAGCAAGTTCCCCACCCACACCCGCGACTCAGATTTCTGCGGATTTTGGTTCAAAGCGCTTCAACTGCTCTATCAAAACTAGGGGTATTTTTTCTTCTGGAAGGATGGAAAGTGAAGATGGGGCCAGCGCAGCTGATAATACAGAATGTCCTGAAGGGGTTCAGTGCTTGAAAATTGAATCTACGATTAATGGAGCGGAAATTGCAGATGAAAATGCTGTTGCCGAAGGGATTCAATTGAAAAGTGAAGCTGTAAATAATAGGGTGGCAGTTGCAAGGGATAATTATGTTTCTGAAAGGGTACCAAGTGAAGCTGTAAATAATGGGGTGGCAATTTCAGATGTGAATGACGTTGATGAAGGGAGCTCTTTTGAGATTCGAACTTACAAGAGGCGTAAGTTAGTAAAGTTGATTCCAGAAAAGAAAGTTCAAGAAGATTGCAGGGCATATGTTGAAGCTGCAAGTCATCTAGCGGAACAGGGTGTGAAGGAACCATGTAATCTCAATGTAGGCAGTACTTCTTACAGGCATTTCTGTCTTCCTGTCAATGGCTCAGATGAATGTTCACATGGACGCTGGGGAAATGTCGTATTAAGGCATCTTTATCAGTCATTAGGTGATGATAAGGGTGGCATTGAGGGATGCATAAGAAAAGCACTGTTATATCAACCTAAAACTAGTTGGGCCACTACAGTTAAGGAAACTCATAAAATTAACAAAGACAGGCAACAATGCTCTTCGCAATTATCTCACAGATTACAGGCTGAAGCTAATGAGAATACAGATGTTATGCCTGATAGATGTGTTACTGAATCAGATAGCAATGGTGTGACTGACATATGTCAACAGGTGCTTTGTAAAGTGTTTGCCTCAGAAAAATTCAATTTGTTATCTAAGGTGCTAAATGAAAGCTTCCCGGGGATGAAGCCCGAATGTGCATTTGACTTTGGTGTCATAAACTCAAGGATGAAAGACGGAGCTTATGAACAATCACCTGCACTTTTCTTGTCAGACATCCAACAGGTGTGGAAAAGGCTTCATGATACTGGTAATGAAATTGTTTCTCTTGCCAAGAGCCTTTCAAATATGTCAAAAACTTCTTACTGTGAGCAGGCAGGAGTTTCAGCACACATCATGTTTGAAGATGAAAAGCTAGAGTTCTGTAACTGGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGAGCGTAGTATGTATAAACTTTGCACTTGCAGTCGTTGTGGAGACAAGGCAAATGGGACAGATTGTTTAGTTTGTGATTCATGTGAGCAGATGTATCACATCTTCTGTATTGAGCCTGCTGTGAAAGAGATACCCCACAAAAGTTGGTATTGCGCCGATTGCACTGCTAGTGGAATTGGATCGCCACATCAAAATTGCACGGTGTGTGAAAGGCTGAATGTCCCAAAGACTCTGAAAAACATAGTTGGTCATGAAAACTTCCTTACAAATGAGGTGCTTCGGGAATTGGAAGATAATTCAAATTGTAGTTATGATGGGCTTCAAGGATCCATAGTTGGGAAAGATTCGTCTGTTTGCAAAGTCTGTGGAACTGATGTGGATGGGAAAAATATGAAAATCTGTGGCCACCCCTACTGCCCCAGTAAATACTACCATGTAAGGTGTTTGACAGCTAAGCAGTTAAATTCATATGGTCCACGGTGGTACTGCCCTTCTTGTTTATGCGGAGTTTGCCTCACTGACCAGGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCACATCTATTGCATGAAACCTCCACGAACTTCTATTCCGGAGGGGAAATGGTTCTGTAGAAAATGTGATGCTGGGATCCAAGCTATACGCCAGGCAAAAAAGGCATATGAGAGTAACAAACAGAGCAAAACTGGTCAAGGCAATAGAAGGCCATGCGGAAATCCTGGAAAGAAATGGAACAATAAACATGGACGGGAATCAGACAAAGGTGGAGGAATGGAGATGCTTTTAACTGCGGCCAGTACTCTGAATAATGAAGAGAACTTGGCAATCCACATTGGATCACAATGA 2091 0.4213 MCSDKTVSRASSPPTPATQISADFGSKRFNCSIKTRGIFSSGRMESEDGASAADNTECPEGVQCLKIESTINGAEIADENAVAEGIQLKSEAVNNRVAVARDNYVSERVPSEAVNNGVAISDVNDVDEGSSFEIRTYKRRKLVKLIPEKKVQEDCRAYVEAASHLAEQGVKEPCNLNVGSTSYRHFCLPVNGSDECSHGRWGNVVLRHLYQSLGDDKGGIEGCIRKALLYQPKTSWATTVKETHKINKDRQQCSSQLSHRLQAEANENTDVMPDRCVTESDSNGVTDICQQVLCKVFASEKFNLLSKVLNESFPGMKPECAFDFGVINSRMKDGAYEQSPALFLSDIQQVWKRLHDTGNEIVSLAKSLSNMSKTSYCEQAGVSAHIMFEDEKLEFCNWESDSHMKPEQTEERSMYKLCTCSRCGDKANGTDCLVCDSCEQMYHIFCIEPAVKEIPHKSWYCADCTASGIGSPHQNCTVCERLNVPKTLKNIVGHENFLTNEVLRELEDNSNCSYDGLQGSIVGKDSSVCKVCGTDVDGKNMKICGHPYCPSKYYHVRCLTAKQLNSYGPRWYCPSCLCGVCLTDQDDDKIVLCDGCDHAYHIYCMKPPRTSIPEGKWFCRKCDAGIQAIRQAKKAYESNKQSKTGQGNRRPCGNPGKKWNNKHGRESDKGGGMEMLLTAASTLNNEENLAIHIGSQ 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00890 696 ProSiteProfiles Zinc finger PHD-type profile. 575 625 IPR019787 -
Bach12g00890 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 522 581 IPR013083 -
Bach12g00890 696 Gene3D - 346 467 - -
Bach12g00890 696 MobiDBLite consensus disorder prediction 1 22 - -
Bach12g00890 696 FunFam PHD finger protein EHD3 isoform A 307 468 - -
Bach12g00890 696 SUPERFAMILY FYVE/PHD zinc finger 577 629 IPR011011 -
Bach12g00890 696 ProSitePatterns Zinc finger PHD-type signature. 573 622 IPR019786 -
Bach12g00890 696 SUPERFAMILY FYVE/PHD zinc finger 523 577 IPR011011 -
Bach12g00890 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 650 IPR013083 -
Bach12g00890 696 MobiDBLite consensus disorder prediction 635 671 - -
Bach12g00890 696 Pfam PHD-finger 420 466 IPR019787 -
Bach12g00890 696 Pfam PHD-finger 578 623 IPR019787 -
Bach12g00890 696 SUPERFAMILY FYVE/PHD zinc finger 413 466 IPR011011 -
Bach12g00890 696 MobiDBLite consensus disorder prediction 635 649 - -
Bach12g00890 696 SMART PHD_3 419 465 IPR001965 -
Bach12g00890 696 SMART PHD_3 528 577 IPR001965 -
Bach12g00890 696 SMART PHD_3 578 623 IPR001965 -
Bach12g00890 696 ProSiteProfiles Zinc finger PHD-type profile. 417 467 IPR019787 -
Bach12g00890 696 PANTHER OS02G0192300 PROTEIN 404 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00890 Bach-Chr12 6277838 6283223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00890 577 649 C2H2 Transcription Factor Family AT3G01460 43.836 3.49e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bach12g00890 PHD 2.7e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00890 - - gmx:100795906 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00890 12 6277838 6283223 Bach12g00890 12 6277838 6283223 ECH