Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00881 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATAGAGAACCCCAGCAACAGGCAAGTTACCTACTCAAAGAGGAAGAATGGGATCCTAAAGAAGGCAAAGGAAATCACTGTTCTATGTGATGCCCAAGTTTCTCTTATCATCTTCGCTCCCTCTGGAAAGATGCATGAGTACATCAGTCCTTCTACCACGTTGATTGACATGCTTGACAGATACCATAAAGCATCTGGGAAGAAGCTTTGGGACGCCCAGCATGAGAACCTCGACAACGAAATTGCTAGGCTCAAGAAAGAGAACGACAGCATGCAAAATAAGCTCAGGCATTTGAAGGGGGAGGACTTTACGTCTTTGAACCACAAGGATCTGATGGCCCTAGAGGAAGCCCTAGAAAATGGCCTCACCAATATCCGAGAGAAACAGGCAAATCTTTCAAACGCCACCGTTTTTTTGTGGAAATTAGGTTGA 462 0.4545 MGRGKIEIKRIENPSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAPSGKMHEYISPSTTLIDMLDRYHKASGKKLWDAQHENLDNEIARLKKENDSMQNKLRHLKGEDFTSLNHKDLMALEEALENGLTNIREKQANLSNATVFLWKLG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00881 153 Coils Coil 121 141 - -
Bach12g00881 153 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach12g00881 153 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bach12g00881 153 Pfam K-box region 82 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach12g00881 153 Gene3D - 14 118 IPR036879 GO:0003677|GO:0046983
Bach12g00881 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach12g00881 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach12g00881 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach12g00881 153 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 138 - -
Bach12g00881 153 ProSiteProfiles K-box domain profile. 84 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach12g00881 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach12g00881 153 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bach12g00881 153 Coils Coil 77 111 - -
Bach12g00881 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach12g00881 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00881 Bach-Chr12 6204729 6205999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00881 1 142 MADS-box Gene Family AT5G20240 68.310 3.14e-67 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach12g00881 K-box 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00881 K09264 - qsa:O6P43_019791 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00881 12 6204729 6205999 Bach12g00881 12 6204729 6205999 ECH