Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00818 ATGGCAGACTCTCAGAGATCTATAGGCACTGTAAAATGGTTTAATGCACAGAAGGGTTTCGGATTCATAGCTGCAGATGATGGTGGTGACGATCTTTTTGTTCATCATAGTTCGATCCGGTCTGATGGGTATCGGACCTTATTCGAGGGTCAGCAAGTGGAGTTCATTGTGGACTATGACGAGGATGGACGGGCCAAGGCTGTTGATGTGACAGTTCTTGTTAGATCTCGCCGTTTTGACAATGTTCGCGGTGGTGGCAGGGGCAGAGGGGTTACGTATGACGACTATGGCGGACGCTATGGCGGTAGTGATGGTTATGGGTATGGTAGAGGTGAAGAGATTGGGAGGAGAGGTGGTAACTACGGTGGTGGAGGTGGCAGATTTGGTGGTGGCGGCGGCGGCCTTGAATGTTATAACTGTGGACGAATGGGTCATTTGGCGAGAGATTGTTATCAGGGTAGTAGTGGTGGGACGCGGAGAAGCGGTGGTGGCACTGGCGGTGGAGGAAGAGCGTCAAGTGGGTGTTTCAATTGTGGGGAGGAAGGGCATTTTGCCAGGGAATGTCCCAATGTTGAGAAATGA 582 0.5137 MADSQRSIGTVKWFNAQKGFGFIAADDGGDDLFVHHSSIRSDGYRTLFEGQQVEFIVDYDEDGRAKAVDVTVLVRSRRFDNVRGGGRGRGVTYDDYGGRYGGSDGYGYGRGEEIGRRGGNYGGGGGRFGGGGGGLECYNCGRMGHLARDCYQGSSGGTRRSGGGTGGGGRASSGCFNCGEEGHFARECPNVEK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00818 193 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 191 - -
Bach12g00818 193 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Bach12g00818 193 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Bach12g00818 193 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Bach12g00818 193 ProSiteProfiles Zinc finger CCHC-type profile. 175 190 IPR001878 GO:0003676|GO:0008270
Bach12g00818 193 Pfam 'Cold-shock' DNA-binding domain 9 72 IPR002059 GO:0003676
Bach12g00818 193 CDD CSP_CDS 9 72 IPR002059 GO:0003676
Bach12g00818 193 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Bach12g00818 193 SUPERFAMILY Retrovirus zinc finger-like domains 127 190 IPR036875 GO:0003676|GO:0008270
Bach12g00818 193 Pfam Zinc knuckle 136 150 IPR001878 GO:0003676|GO:0008270
Bach12g00818 193 Pfam Zinc knuckle 174 190 IPR001878 GO:0003676|GO:0008270
Bach12g00818 193 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Bach12g00818 193 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Bach12g00818 193 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
Bach12g00818 193 SMART csp_8 8 73 IPR011129 GO:0003676
Bach12g00818 193 Gene3D - 133 161 - -
Bach12g00818 193 Gene3D - 166 193 - -
Bach12g00818 193 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Bach12g00818 193 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Bach12g00818 193 Gene3D - 1 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00818 Bach-Chr12 5758389 5758970 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bach12g00818 CSD 1.1e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00818 - - qsa:O6P43_015217 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00818 12 5758389 5758970 Bach12g00818 12 5758389 5758970 ECH