Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00766 ATGTCGCACTTCGGGAGATCTGGCCCCCCAGACATCAGAGACACCTACTCCCTTCTTGTTCTCAACATCACTTTCCGTACCTCCGCGGACGATCTCTTCCCACTCTTCGACAAGTACGGCAAGGTCGTCGATGTCTTCATCCCCAGAGACCGAAGGACTGGTGAATCTCGAGGTTTTGCGTTTGTTCGTTATAAGTATGCAGACGAGGCACAAAAGGCAGTGGATAAACTTGATGGAAGAGTAGTTGACGGCAGAGAAATTATGGTTCAATTTGCAAAATACGGACCTAATGCTGAAAAAATTCACAAGGGTAGAGTAGCAGAAGCAACATCGAAGCCAAGAGGGAGGTCAAGAAGCCGCAGCCCTCGTCCTAGGCATAGGGATGAACATAGAGACAAAGACTACAGGAGGAGAAGTCGCAGTCGGAGTAGGGAGAGATATGGTCGTGACAAAGACAGATACCGTGAAAGGGAGAAGGATAATTATCGTCGAAGCAGGAGTCGTAGTGCAAGTCCTGATCGTCGCAGAGATCGTGGGAGAGATAGATACGACGGGGAACGTCGTACTCGGAGCAGATCTTATGATAATGCATCCCCATCTCGGCGTGAACCCAGTCCTCATAGGAGCCCATCTCCAGAGAGGAGGACTTCTCGGGATGGACAGCGTGGTGAACAAAATACCAATGGGCAATCTCCTATTCAAAAGGATGTTTCACCCCGTGAGCGATCTGTAGATTCTCGAAGCCCATCTCCCCACAGATCTGATGTTGATGAATGATCGAGCTGCCTGTCATGTGGTGGAAATATTGATGGCATGGCGAGTTTTCTTGTTGAAGACAGTAAATTATCGCTGTTGTGATCTACATCTTGATTATCAACATTTTTGTGTGGACATATTTGGAAGGTTCACATTCTTGTTTGATTTAGTGCATTTCATCTTACTTGAATGGTACCTTTTGTATTGTAAGATTTTTTTCCGTTTGATACTATATTAAGTGTCCAACATATAGCTTAAAGAGTTCCTGTCAAATGGTCATTTCTG 1041 0.4582 MSHFGRSGPPDIRDTYSLLVLNITFRTSADDLFPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIHKGRVAEATSKPRGRSRSRSPRPRHRDEHRDKDYRRRSRSRSRERYGRDKDRYREREKDNYRRSRSRSASPDRRRDRGRDRYDGERRTRSRSYDNASPSRREPSPHRSPSPERRTSRDGQRGEQNTNGQSPIQKDVSPRERSVDSRSPSPHRSDVDE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00766 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Bach12g00766 258 SMART rrm2_1 17 90 IPR003954 GO:0003676
Bach12g00766 258 MobiDBLite consensus disorder prediction 125 197 - -
Bach12g00766 258 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Bach12g00766 258 MobiDBLite consensus disorder prediction 100 115 - -
Bach12g00766 258 MobiDBLite consensus disorder prediction 100 258 - -
Bach12g00766 258 MobiDBLite consensus disorder prediction 222 237 - -
Bach12g00766 258 MobiDBLite consensus disorder prediction 206 221 - -
Bach12g00766 258 SMART rrm1_1 17 90 IPR000504 GO:0003723
Bach12g00766 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 87 IPR000504 GO:0003723
Bach12g00766 258 Gene3D - 4 104 IPR012677 -
Bach12g00766 258 MobiDBLite consensus disorder prediction 238 258 - -
Bach12g00766 258 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Bach12g00766 258 CDD RRM_SRSF2_SRSF8 18 90 - -
Bach12g00766 258 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00766 Bach-Chr12 5333111 5335935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00766 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.40e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00766 K12891 - cave:132190255 301.212