Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00677 CTTTGGCTCCCGTACAATGATCAGGGCAGCATATCGAAGTGTGTCCCGATTACTCCGTTTTCCAGTAGTCATGCTACCGCTATTGTAAAATTGTGCATTGGAACTTAAAACCCAGACTGAGATCATTACTGATCCCAGAAAGTCGGTAGAGACAACAACGGGATCACCATGGCGACCCCAGTGGTACGGTTGCACATTCAGGGTCGATATGTGGTGATGGATAATGGAATACTCCAAGTCAGCTTATCAAATCCTGATGGAATCGTTACTGGGATACGATATAATGGTGTCGACAATTTGCTTGAAGTTCTTAACAACGAGTCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCAGCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAAGTGGAACTTTCATTCACAAGAATGTGGGATCCTTCTCTTGAGGGAAAATTTGTCCCCTTAAATATTGACAAAAGATTTGTAATGCTCCGTGGTTCATCAGGCTTCTACTCTTACGCCATATATGAGCACTTAAACGGCTGGCCAGATTTTGATCTTGGCGAAACAAGGATCACATTCAAGCTCAGAAAGGACAAGTTTAATTACATGGCCATGGCAGACAATAGGCGAAGGATTATGCCTTTTCCGGATGATCGCTTACCAGGAAGATGCCAACCTTTGGCCTACCCAGAAGCTGTCATACTTGTCAATCCCAAGGATCCACAACTTAGAGGAGGGGTGGATGACAAATATCAATATTCACGTCAAAACATGGATAATCAAGTACATGGGTGGATATCTTTCAATCCACCAGTAGGAATCTGGCAAATTACACCTAGTGATGAGTTCCGAACTGGTGGACCCCACAAACAAAATTTAACCTCGCATGTAGGCCCGACCATGCTTGCAATGTTTCATAGTGGTCATTATGCGGGACAAGATTTGGTGCCAAAAATTAGAGCTGGTGAACCATGGAAGAAAGTTTTTGGTCCTGTTTATATCTATGTCAATTCCGGATCTATTGGTGATGACCCACATTGGCTATGGGAGGATGCTAAAATACAGATGATGGCCGAAGTCCAGAGCTGGCCATACTCTTTCCCTGCTTCAGAGGATTTCTTAAAGGCAGATCAACGGGGCAATGTTAGTGGAAGACTACTTGTCTTAGACAGGTACATTAGCACTGATTTGATACCAGCAAATATTGCTTTTGTTGGTCTGGCTCCACCGGGAGATGCAGGTTCGTGGCAAAGAGAATGCAAGGATTATCAGTTCTGGACCAGAGCAGATGAGAATGGATTTTTTACCATTAGTAACGCACGTCCAGGTGACTATAACCTGTATGCCTGGGTCCCTGGTTTTATTGGGGACTATAAATTTGATGATTTGATGAAGATAACCTCAGGTTCTTACAATGAAGTGGGTGAACTTGTATATGAGCCTCCCAGGGATGGGCCAACGTTGTGGGAAATAGGCATTCCAGATAGATCAGCTGCAGAATTTTACGTTCCTGATCCTGATCCAAAATATGTTAATGGACTTTTCATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGGAGATCTGGTTTACACAATTGGTGCTAGTAACTATTCTAAGGACTGGTTTTTTGCTCAGGTTCCCAGAAGAAAAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTTGAACTTGATAATGTGATTAGGGACAGCACATATAAGTTGAGAGTTGCAATTGCATCTGCAACCTTAGCTGAAATGCAGGTTCGAGTGAATGACCCAAATTCAAGGCGCCCCGTGTTTACCACTGGATTAGTAGGAAGGGACAATTCAGTTGCAAGACATGGGATTCATGGAATCTACAGGCTTTACCATGTGAATATACCAGGTTCTTTGCTTGTTCATGGCACAAATACCATATTTTTAACACAGCCAAGATGCACCAGCCCTTTCCAGGGAATCATGTACGATTATATTCGTTTGGAAGGCCCTCCTTGTTTTCAAGCAGACATTTAACTTCATTTGAAGTTTAATGTTAGGAAAGAAACACATCTGGTACGAAATTTTAGTACAACTGTCGTTGTCTTGGAATGTCTGTTGGTAGACCATTGCTATTTTGTGTGTGTATATATAATTTCTTTCGTTTTACGTTTTAGGATATAATTTGATATAATGATACGTCTGGAAGATCCTTTACGCAATAAATGATATAATGC 2285 0.4184 MATPVVRLHIQGRYVVMDNGILQVSLSNPDGIVTGIRYNGVDNLLEVLNNESNRGYWDLVWSAAGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFVMLRGSSGFYSYAIYEHLNGWPDFDLGETRITFKLRKDKFNYMAMADNRRRIMPFPDDRLPGRCQPLAYPEAVILVNPKDPQLRGGVDDKYQYSRQNMDNQVHGWISFNPPVGIWQITPSDEFRTGGPHKQNLTSHVGPTMLAMFHSGHYAGQDLVPKIRAGEPWKKVFGPVYIYVNSGSIGDDPHWLWEDAKIQMMAEVQSWPYSFPASEDFLKADQRGNVSGRLLVLDRYISTDLIPANIAFVGLAPPGDAGSWQRECKDYQFWTRADENGFFTISNARPGDYNLYAWVPGFIGDYKFDDLMKITSGSYNEVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPDPKYVNGLFINHPDRFRQYGLWDRYTELYPDGDLVYTIGASNYSKDWFFAQVPRRKEDNTHQGTTWQIKFELDNVIRDSTYKLRVAIASATLAEMQVRVNDPNSRRPVFTTGLVGRDNSVARHGIHGIYRLYHVNIPGSLLVHGTNTIFLTQPRCTSPFQGIMYDYIRLEGPPCFQADI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00677 638 Gene3D - 438 629 - -
Bach12g00677 638 Pfam Polysaccharide lyase family 4, domain II 356 424 IPR029413 -
Bach12g00677 638 Gene3D - 328 427 - -
Bach12g00677 638 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Bach12g00677 638 SUPERFAMILY Galactose mutarotase-like 18 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bach12g00677 638 CDD RGL4_C 442 629 - -
Bach12g00677 638 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Bach12g00677 638 CDD RGL4_N 6 293 - -
Bach12g00677 638 CDD RGL4_M 331 430 IPR029413 -
Bach12g00677 638 Gene3D - 8 307 IPR014718 GO:0030246
Bach12g00677 638 SUPERFAMILY Starch-binding domain-like 329 410 IPR013784 GO:0030246
Bach12g00677 638 FunFam Rhamnogalacturonate lyase B 328 427 - -
Bach12g00677 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 632 - -
Bach12g00677 638 Pfam Rhamnogalacturonate lyase family 6 200 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00677 Bach-Chr12 4686021 4691736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00677 1 632 Polysaccharide Lyase AT1G09910 68.987 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00677 K18195 - gmx:100814185 1157.9