Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00676 ATGACATCGCCAGGAGTACAGTTAATTATTGAAGATAGTCATGTGGTGATGGACAATGGCATACTACAAGTGAGGATTTCCAAACCAGGTGGATTCATCACTGGAATACGATATAATGGCATTGATAATCTGCTTGAAGATCTTAGCCAAAGTGATGATAGAGGGTACTGGGACGTTGTTTGGAGTGTAGCAGGCAGTACAGGCACAACTGGGACATTTGAACTGATTGTGGGAACAAGTTTCAGAGTCGTAGTGGAAAATGAGGAACTGGCGGAGATCTCATTTACAAGAACTTGGGATCCATCTCTGGAGGGAAAGCTTTCGCCCCTGAACATAGATAAAAGGTATGTGATGCTTCGTAATTCCCCAGGCTTCTACTCATACGGCATCTTTGAACACTTGAAAGAGTGGCCAGCTTTCAACATACCTCAAATCAGAATTGTCTTCAAGCTCCGAAAGGACAAGTTTCATTATATGGCGATAGCGGATAATAGGCAAAGGTTTATGCCTCTTCCGGATGACCGGTTACCGGGAAGGGGACAAGAACTAGCCACCCCAGAGGCAGTCTTACTTGTTAATCCTGTGGAGCCCGAGTTCAAGGGAGAGGTGGATGACAAGTATCAATACTCAAATGATAACAAAGATCTCAAGGTCCATGGGTGGATAAGCTCCGACACCACAACGGATCCTGCAACGGGTTTCTGGGTAATCATACCAAGCAATGAATTCCGATCAGGCGGTCCCGTTAAACAGAACCTCACCTCCCATGTAGGACCCTTCAGCCTCGCAATGTTTCTGAGTGCTCACTATGCAGGAGAGGATCTAGTTCTGAAACTACAACCAAACGAACCGTGGAAGAAAGTTTTCGGGCCAGTCTTTGTGTATCTTAACACTTTGTTGGATAATGATGATCCACTCTGGCTCTGGGAAGATGCCAAAAATCAGATGGCAAAGGAAGTCCAATGTTGGCCCTATGATTTTCCGGCTTCAGAGGATTACCAGAAGGCAGATCAACGGGGCTCTGTTTGTGGCACGTTACAAGTCCGAGACTGGTTTTTAAGTGATGATTATATATCAGCTGAAGGCGCCTATGTGGGACTGGCACCACCAGGAGAGGCAGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTCTGGACTAGAGTAGACGAGGCAGGCTCCTTCTCAATTAGTAATATACGCAGTGGGGATTATAATCTATATGCATGGGTACCTGGCTTCATTGGAGAGTACTGGAACGAACTTGTCCTCACCATAACCCCAGGTTGTCAAATTAATGTTGGTGATATTGTATATGAACCCCCAAGGGATGGTCCAACATTATGGGAAATAGGCATCCCTGATCGTTCTGCTGCTGAGTTCTTTGTTCCTGATCCTAATCCTAAGTACTTAAATAAGCTTTATGTCAACCATCCAGACAAGTTCAGGCAGTATGGCTTGTGGGAAAGATACGCAGATTTATACCCAAATGAGGATTTGATATATACTGTTGGTGTTAGTGACTGGACAGAAGATTGGTTCTTTGCACAAGTTACCAGGAAGAAAGATGATGGCAGTTACCAGGGAACTACCTGGCACATTAAGTTCAAGCTCGAGGATGTGGAGACAAGTGGGAATTATAAACTACGGTTGGCACTTGCAACTGCAAATGTCTCCGAATTACAGGTTAGAGTGAATAATCCAAAAGAAGATCCTCTATTTACTACGGGGGTGATTGGAAAAGACAACACAATATCTAGACATGGAATTCATGGTCTCTACTGGCTATACAACATTGATATATCAAGTCTTGTGCTGGTGGAGGGCGATAATACTATCTATCTCACGCAGACGATAGCCACTGGCCCTTTACAGGGGATAATGTATGACTATATTCGTTTAGAAGGGCCACCAATCCCATAA 1923 0.4446 MTSPGVQLIIEDSHVVMDNGILQVRISKPGGFITGIRYNGIDNLLEDLSQSDDRGYWDVVWSVAGSTGTTGTFELIVGTSFRVVVENEELAEISFTRTWDPSLEGKLSPLNIDKRYVMLRNSPGFYSYGIFEHLKEWPAFNIPQIRIVFKLRKDKFHYMAIADNRQRFMPLPDDRLPGRGQELATPEAVLLVNPVEPEFKGEVDDKYQYSNDNKDLKVHGWISSDTTTDPATGFWVIIPSNEFRSGGPVKQNLTSHVGPFSLAMFLSAHYAGEDLVLKLQPNEPWKKVFGPVFVYLNTLLDNDDPLWLWEDAKNQMAKEVQCWPYDFPASEDYQKADQRGSVCGTLQVRDWFLSDDYISAEGAYVGLAPPGEAGSWQRECKGYQFWTRVDEAGSFSISNIRSGDYNLYAWVPGFIGEYWNELVLTITPGCQINVGDIVYEPPRDGPTLWEIGIPDRSAAEFFVPDPNPKYLNKLYVNHPDKFRQYGLWERYADLYPNEDLIYTVGVSDWTEDWFFAQVTRKKDDGSYQGTTWHIKFKLEDVETSGNYKLRLALATANVSELQVRVNNPKEDPLFTTGVIGKDNTISRHGIHGLYWLYNIDISSLVLVEGDNTIYLTQTIATGPLQGIMYDYIRLEGPPIP 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00676 640 Gene3D - 335 434 - -
Bach12g00676 640 SUPERFAMILY Starch-binding domain-like 362 437 IPR013784 GO:0030246
Bach12g00676 640 SUPERFAMILY Galactose-binding domain-like 444 635 IPR008979 -
Bach12g00676 640 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 638 - -
Bach12g00676 640 FunFam Rhamnogalacturonate lyase B 335 434 - -
Bach12g00676 640 CDD RGL4_N 11 305 - -
Bach12g00676 640 Gene3D - 445 635 - -
Bach12g00676 640 CDD RGL4_M 338 437 IPR029413 -
Bach12g00676 640 Pfam Polysaccharide lyase family 4, domain III 447 634 IPR029411 -
Bach12g00676 640 Gene3D - 7 276 IPR014718 GO:0030246
Bach12g00676 640 CDD RGL4_C 449 635 - -
Bach12g00676 640 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Bach12g00676 640 SUPERFAMILY Galactose mutarotase-like 12 277 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bach12g00676 640 Pfam Rhamnogalacturonate lyase family 10 203 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00676 Bach-Chr12 4681395 4685064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00676 1 637 Polysaccharide Lyase AT1G09890 64.734 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00676 K18195 - gmx:100815677 1094.72