Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00673 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCCGGCAAGTGACGTTCTCGAAGCGAAGGAGTGGTTTGCTGAAGAAGGCGAAGGAGCTAGCAATCCTTTGCGACGCTGAGGTTGGACTTATGATCTTCTCCAGCACTGGCAAGCTCTACGATTTCGCCAGCACCAGCATGAAATCAGTAATTGAACGATACAACAAAATAAAAGAGGAAAATCATCCACTTGGCAGCTCAACCTCTGAAGTAAAGTTTTGGCGAAGGGAGGGAGCAATGTTACGGCAACAATTGCAAAACTTGCAAGAAAGCCACAGGCAAATGATGGGAGAAGAACTTTCAGGTTTGAATGTCAAAGAATTGCAAAGTTTAGAGAACCAATTGGAAATTAGCCTCCAGGGTGTCCGAATGAAAAAGGGAAACCTCGTACAACAAGAAAATGTGGAGTTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAATTAAAAAAGAAGGTTTATGGAACAAGAGATGGGAACGGAATAAACAGAAACTCAGTTCTCACAAATAGTCTAGAGATAGGAGAAGATTTGCAGGTACCCGTGAATCTCCAGCTTAGCCAGCCACAGCAACAGAGCTATGAGACACATTCAGGAGCCACAAAGCTGGGATTGCGGCTGCATTGA 678 0.4425 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGLMIFSSTGKLYDFASTSMKSVIERYNKIKEENHPLGSSTSEVKFWRREGAMLRQQLQNLQESHRQMMGEELSGLNVKELQSLENQLEISLQGVRMKKGNLVQQENVELYKKVNLIRQENMELKKKVYGTRDGNGINRNSVLTNSLEIGEDLQVPVNLQLSQPQQQSYETHSGATKLGLRLH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00673 225 Coils Coil 149 169 - -
Bach12g00673 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach12g00673 225 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Bach12g00673 225 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach12g00673 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach12g00673 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Bach12g00673 225 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bach12g00673 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach12g00673 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach12g00673 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach12g00673 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach12g00673 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach12g00673 225 Coils Coil 86 106 - -
Bach12g00673 225 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Bach12g00673 225 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bach12g00673 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach12g00673 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00673 Bach-Chr12 4651781 4660561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00673 1 217 MADS-box Gene Family AT4G37940 63.594 1.19e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach12g00673 K-box 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00673 K09264 - gmx:100812413 355.91