Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00579 AATATGCAGCAGAGGCTCAAGTTACAGCAACAGCAAGCCATTATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTACCACCCTGGGATGCTAGCTGCAGCTATGTCTCAGATGGAGCCTATTCCAAGTGGAAATCTGCCTCCTGGTTTTGACGCCAGTTCATGCCGCAGTGTTTATGTAGGAAATATTCATGTAAACGTCACCGATAAACTTCTTGCTGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAACTCATCAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCCTCTGCAGCACTTGCAATAATGTCATTGCATGGACGGCAATTATATGGTCAAGCACTCAAGGTGAATTGGGCGTATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTTCAATATATTTGTCGGTGATTTGAGCCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCCAAGGTCATGTGGGATCATAAAACTGGTCGCTCCAAAGGATATGGCTTTGTTGCTTTCCGTGATCAGCAGGATGCCCAAAATGCCATCAATGATATGACTGGTAAGTGGTTGGGAAATAGGCAAATACGATGCAATTGGGCGACTAAGGGTGCTGGTGCCAGCTCCACTGATGAGAAGAACAATGATAACCAAAATGCGGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAGGAAAATAACAATGAGGATGCTCCTGAAAACAATTCAGCATACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATGCACTGGGGGCTGGGGTCATTGAAGAAGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTTAGATACAACACTCATGAGGAAGCAGCTTTGGCCATTCAGATGGGTAATGGAAGAATTATTCGTGGGAAGACAATGAAGTGCTCCTGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCTATGCCTCCTCCAGCTCAACCATATCAAATCCTTCCAACTGCAGGGATGAACCAAGGCTATTCTCCAGCTGAGTTGTTGGCTTATCAGCGCCAACTTGCCCTTAGCCAGGCTGCTGTACCTGTATCCGGTCTTTCTGGTCAAGCTCTTGTTCAAATGACTGGACAACATGGCCTAGCTGCAGCTTCCATGGGCTTAAGCTCTGGTGGATCACACACCATGTACGATGGATATACTAATAATTCATCAAGACAGCAACTCATGTATTATCGTTAACACCATGGCAGTGAAGATTCAGCTTGTATTTTTGCCTTCTTGATGGCGTCAATGCATCCCATTTGTCCTGCGCCCATTAACAGTATGCCCTTTCTAAAAATGGGTTTTCTGATTGAGGAAGGCATTTTGGCTTATTTGCTTAAATTTTGGTATCTTCTTGTAATATGTATAATTTGATCTATGTGGGTTTGTTAGAAATTGCAGCAGAATGTTTTATTTTGGGTTTTAGTTTCTCATTGGTGGTATTGTATATGGCACTTTTAATGTTAATAATTCCATGTTCTCATTTTCGT 1607 0.4381 MQQRLKLQQQQAIMQQALLQQQQMYHPGMLAAAMSQMEPIPSGNLPPGFDASSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMSLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDHKTGRSKGYGFVAFRDQQDAQNAINDMTGKWLGNRQIRCNWATKGAGASSTDEKNNDNQNAVVLTNGSSDGGQENNNEDAPENNSAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMGNGRIIRGKTMKCSWGSKPTPPGTASNPMPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVPVSGLSGQALVQMTGQHGLAAASMGLSSGGSHTMYDGYTNNSSRQQLMYYR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00579 436 SMART rrm1_1 56 125 IPR000504 GO:0003723
Bach12g00579 436 SMART rrm1_1 263 332 IPR000504 GO:0003723
Bach12g00579 436 SMART rrm1_1 141 214 IPR000504 GO:0003723
Bach12g00579 436 MobiDBLite consensus disorder prediction 219 258 - -
Bach12g00579 436 SUPERFAMILY RNA-binding domain, RBD 252 345 IPR035979 GO:0003676
Bach12g00579 436 SUPERFAMILY RNA-binding domain, RBD 134 236 IPR035979 GO:0003676
Bach12g00579 436 SMART rrm2_1 263 332 IPR003954 GO:0003676
Bach12g00579 436 SMART rrm2_1 141 214 IPR003954 GO:0003676
Bach12g00579 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 339 - -
Bach12g00579 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Bach12g00579 436 Gene3D - 240 340 IPR012677 -
Bach12g00579 436 FunFam Nucleolysin TIAR-like protein 139 237 - -
Bach12g00579 436 Gene3D - 139 219 IPR012677 -
Bach12g00579 436 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Bach12g00579 436 Gene3D - 1 138 IPR012677 -
Bach12g00579 436 CDD RRM2_PUB1 139 218 - -
Bach12g00579 436 FunFam Nucleolysin TIAR-like protein 1 138 - -
Bach12g00579 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Bach12g00579 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Bach12g00579 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Bach12g00579 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Bach12g00579 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Bach12g00579 436 FunFam Oligouridylate-binding protein 1C 239 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00579 Bach-Chr12 3943700 3953072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00579 47 336 Eukaryotic Initiation Factors Gene Family AT4G34110 26.578 1.06e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00579 K13201 - gmx:100777108 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00579 12 3943700 3953072 Bach12g00579 12 3943700 3953072 ECH