Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bach12g00579 | AATATGCAGCAGAGGCTCAAGTTACAGCAACAGCAAGCCATTATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTACCACCCTGGGATGCTAGCTGCAGCTATGTCTCAGATGGAGCCTATTCCAAGTGGAAATCTGCCTCCTGGTTTTGACGCCAGTTCATGCCGCAGTGTTTATGTAGGAAATATTCATGTAAACGTCACCGATAAACTTCTTGCTGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAACTCATCAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCCTCTGCAGCACTTGCAATAATGTCATTGCATGGACGGCAATTATATGGTCAAGCACTCAAGGTGAATTGGGCGTATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTTCAATATATTTGTCGGTGATTTGAGCCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCCAAGGTCATGTGGGATCATAAAACTGGTCGCTCCAAAGGATATGGCTTTGTTGCTTTCCGTGATCAGCAGGATGCCCAAAATGCCATCAATGATATGACTGGTAAGTGGTTGGGAAATAGGCAAATACGATGCAATTGGGCGACTAAGGGTGCTGGTGCCAGCTCCACTGATGAGAAGAACAATGATAACCAAAATGCGGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAGGAAAATAACAATGAGGATGCTCCTGAAAACAATTCAGCATACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATGCACTGGGGGCTGGGGTCATTGAAGAAGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTTAGATACAACACTCATGAGGAAGCAGCTTTGGCCATTCAGATGGGTAATGGAAGAATTATTCGTGGGAAGACAATGAAGTGCTCCTGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCTATGCCTCCTCCAGCTCAACCATATCAAATCCTTCCAACTGCAGGGATGAACCAAGGCTATTCTCCAGCTGAGTTGTTGGCTTATCAGCGCCAACTTGCCCTTAGCCAGGCTGCTGTACCTGTATCCGGTCTTTCTGGTCAAGCTCTTGTTCAAATGACTGGACAACATGGCCTAGCTGCAGCTTCCATGGGCTTAAGCTCTGGTGGATCACACACCATGTACGATGGATATACTAATAATTCATCAAGACAGCAACTCATGTATTATCGTTAACACCATGGCAGTGAAGATTCAGCTTGTATTTTTGCCTTCTTGATGGCGTCAATGCATCCCATTTGTCCTGCGCCCATTAACAGTATGCCCTTTCTAAAAATGGGTTTTCTGATTGAGGAAGGCATTTTGGCTTATTTGCTTAAATTTTGGTATCTTCTTGTAATATGTATAATTTGATCTATGTGGGTTTGTTAGAAATTGCAGCAGAATGTTTTATTTTGGGTTTTAGTTTCTCATTGGTGGTATTGTATATGGCACTTTTAATGTTAATAATTCCATGTTCTCATTTTCGT | 1607 | 0.4381 | MQQRLKLQQQQAIMQQALLQQQQMYHPGMLAAAMSQMEPIPSGNLPPGFDASSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMSLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDHKTGRSKGYGFVAFRDQQDAQNAINDMTGKWLGNRQIRCNWATKGAGASSTDEKNNDNQNAVVLTNGSSDGGQENNNEDAPENNSAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMGNGRIIRGKTMKCSWGSKPTPPGTASNPMPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVPVSGLSGQALVQMTGQHGLAAASMGLSSGGSHTMYDGYTNNSSRQQLMYYR | 436 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bach12g00579 | 436 | SMART | rrm1_1 | 56 | 125 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | SMART | rrm1_1 | 263 | 332 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | SMART | rrm1_1 | 141 | 214 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | MobiDBLite | consensus disorder prediction | 219 | 258 | - | - | |
Bach12g00579 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 252 | 345 | IPR035979 | GO:0003676 | |
Bach12g00579 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 134 | 236 | IPR035979 | GO:0003676 | |
Bach12g00579 | 436 | SMART | rrm2_1 | 263 | 332 | IPR003954 | GO:0003676 | |
Bach12g00579 | 436 | SMART | rrm2_1 | 141 | 214 | IPR003954 | GO:0003676 | |
Bach12g00579 | 436 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 46 | 339 | - | - | |
Bach12g00579 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | Gene3D | - | 240 | 340 | IPR012677 | - | |
Bach12g00579 | 436 | FunFam | Nucleolysin TIAR-like protein | 139 | 237 | - | - | |
Bach12g00579 | 436 | Gene3D | - | 139 | 219 | IPR012677 | - | |
Bach12g00579 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 39 | 133 | IPR035979 | GO:0003676 | |
Bach12g00579 | 436 | Gene3D | - | 1 | 138 | IPR012677 | - | |
Bach12g00579 | 436 | CDD | RRM2_PUB1 | 139 | 218 | - | - | |
Bach12g00579 | 436 | FunFam | Nucleolysin TIAR-like protein | 1 | 138 | - | - | |
Bach12g00579 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 330 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | IPR000504 | GO:0003723 | |
Bach12g00579 | 436 | FunFam | Oligouridylate-binding protein 1C | 239 | 340 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bach12g00579 | Bach-Chr12 | 3943700 | 3953072 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bach12g00579 | 47 | 336 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.578 | 1.06e-21 | 95.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bach12g00579 | K13201 | - | gmx:100777108 | 803.512 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bach12g00579 | 12 | 3943700 | 3953072 | Bach12g00579 | 12 | 3943700 | 3953072 | ECH |