Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00470 ATGGCTTACCACAATCATCATCTGTCTCAAAACCTTCCTCTCCACCATTACACGGACCACCACCAGCAGAACCAGCCTCTAAGTGATAGCACCTTGCGTACCATATTGCCGGACCAGCTGCAGTCATCTCCGGACCCATCCACCAAACCTGGCTCCGATCCCCACCACCAACACCCACTCCAAACCGCACCAAATTGGCTCAACAACGCCCTTCTTCGCACCCAGTATAGCGATGCCACCAATACTGATAACAATAATAACAACGCTGCCAACAGCAACGGCGGCACCAATTTCCTCAACCTCCACACTGCCGCCTCTGACTCCACCGGAGCTGCTGCTTCCCAGTCCTCTAGCCAATGGTTGTCACGCCCGATCCTACACCGTAACCACAGTGATGTCATCGACGATGTCGCCGCCAGGGATTCCATCATCGCCGGCGCCAGCCTGTCTCATGAATCCGCTGATTTGAAGACCACAAGCGACAATCTTAATAACAAGACCGAGGCGGTGGTGGTTGATAGTGGCGATGGCTTGGTGAACTGGCAGAATGCTAGGTACAAGGCGGAGATTCTAGCTCACCCGCTGTACGAACAGCTTCTGTCGGCCCACGTGGCGTGCTTGCGAATCGCCACGCCGGTCGACCAGTTGCCCAGAATTGACGCTCAGCTCGCGCAGTCCCAGAATGTGCTCGCCAAGTACTCAGCCTTGGGACATGGTGCTCACAGCATGGTTGGAGACGAGAAGGAACTCGATCAGTTCATGTCGCACTATGTTTTACTGCTCTGTTCCTTCAAAGATCAACTGCAGCAACATGTTCGGGTCCACGCAATGGAAGCAGTTATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGGGTTTCACCTGGTGAAGGCACAGGAGCAACAATGTCGGATGACGAGGACGACCAGGTAGATAGTGATGCTAATATATTTGATGGTAGTTTGGATGGTCCAGACAGTATGGGATTTGGCCCTCTGGTTCCAACAGAGACTGAGAGGTCCCTCATGGAGCGTGTAAGACAGGAATTAAAGCATGAACTTAAACAGGGCTATAAGGAGAAAATTGTGGACATAAGAGAAGAAATTTTGCGCAAGAGACGCGCAGGGAAACTCCCTGGTGACACCACTTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGACAAGGCTGGTGCAGGAAACTGGTTTGCAATTAAAGCAAATTAATAACTGGTTCATCAATCAGAGGAAGAGGAACTGGCACAGCAATCCTTCATCTTCCACTGTCTTGAAAAGCAAACGCAAAAGGTAG 1350 0.5096 MAYHNHHLSQNLPLHHYTDHHQQNQPLSDSTLRTILPDQLQSSPDPSTKPGSDPHHQHPLQTAPNWLNNALLRTQYSDATNTDNNNNNAANSNGGTNFLNLHTAASDSTGAAASQSSSQWLSRPILHRNHSDVIDDVAARDSIIAGASLSHESADLKTTSDNLNNKTEAVVVDSGDGLVNWQNARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVLAKYSALGHGAHSMVGDEKELDQFMSHYVLLLCSFKDQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANIFDGSLDGPDSMGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKTRLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00470 449 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 435 - -
Bach12g00470 449 Pfam ELK domain 352 373 IPR005539 GO:0003677
Bach12g00470 449 CDD homeodomain 375 436 IPR001356 GO:0003677
Bach12g00470 449 FunFam homeobox protein knotted-1-like 3 isoform X1 373 434 - -
Bach12g00470 449 SMART KNOX2_2 239 295 IPR005541 GO:0003677|GO:0005634
Bach12g00470 449 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Bach12g00470 449 SMART HOX_1 374 439 IPR001356 GO:0003677
Bach12g00470 449 Pfam KNOX2 domain 244 294 IPR005541 GO:0003677|GO:0005634
Bach12g00470 449 SMART KNOX1_2 184 228 IPR005540 GO:0003677|GO:0005634
Bach12g00470 449 SUPERFAMILY Homeodomain-like 374 438 IPR009057 -
Bach12g00470 449 MobiDBLite consensus disorder prediction 37 62 - -
Bach12g00470 449 ProSiteProfiles ELK domain profile. 352 372 IPR005539 GO:0003677
Bach12g00470 449 SMART ELK_2 352 373 IPR005539 GO:0003677
Bach12g00470 449 Gene3D - 371 443 - -
Bach12g00470 449 Pfam KNOX1 domain 186 227 IPR005540 GO:0003677|GO:0005634
Bach12g00470 449 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00470 Bach-Chr12 3218299 3221281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00470 1 449 Homeobox Transcription Factor Family AT5G25220 65.385 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bach12g00470 KNOX2 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00470 - - qsa:O6P43_015734 734.561