Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00458 ATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCGGATCGCAAACCAGTCTACAATATAGAGGACTCAGATGACGATGCTGATTTTTTGCCTAGAAAACCTGGGGCAACTGACGAAAAGTTTGAGAGGATCGTTAGAAGTGATGCAAAAGAAAATGCTTGTCAAGCTTGCGGGGAAAGTGAAAATCTTCTGAGTTGTGAAACATGCTCTTATGCTTATCATCCTAGATGTTTACTCCCACCACTCAAAACTCCTCTTCCAGACAGCTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATAGTGAGATGCGCCCCACTGTTGCTGTTGACACTGATGCTACAAAACTAGGGTCAAAGCAAATCTTTGTTAAACAATATCTTGTTAAGTGGAAGGGACTATCTTATCTACACTGTATATGGGTGCCAGAGAAAGAGTTCCTGAAAGCTTTCAAGACACATCCTCGTCTAAAGACCAAAGTAAACAACTTTAACCGCCAAATGGCATCAATCAATACATCTGATGAAGACTTTGTTGCCATCCGGCCTGAATGGACTACTGTTGATCGCATACTTGCTTGCAGGGATGACGGTGATGAGAAAGAATATCTTGTGAAATGGAAAGAGCTTTCATATGATGAATGCAATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTTCAGTCTAGGTCCCGGAAGCATTCTTCCAGTAAGCAGAAAAGCTCTACTATGGATGGTGCTGACTCAAAGAAGCAGCAAAAAGAATTTCACCAGTATGAACATAGCCCTGATTTTCTTTCAGGAGGTAAACTACATCCCTATCAACTAGAGGGCTTGAACTTCTTACGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGCATTGCTTTTCTAGCATCTCTTTATGGAGAGGGTGTTTCTCCACATCTGGTGGTTGCCCCACTTTCAACTCTCCGAAACTGGGAACGTGAATTCGCAACATGGGCTCCTCAAATGAATGTGGTTATGTATGTTGGATCTGCCCAAGCTCGTGCCGTTATAAGAGAGTATGAATTTTATTTTCCAAAGAACCAGAAAAAGATCAAGAAAAAGAAATCTGGTCAAATTGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGACGTTCTTTTGACATCGTATGAAATGATCAACTTGGACAATGCATCGTTGAAGCCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCATCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTAAAGCAGTATTCCAGCAGACATCGTGTGCTTTTGACAGGGACTCCTCTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCACTTCCTAGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAACAGATTTCGAGGCTTCACAAAATGTTGGCACCGCACCTCCTTAGAAGAGTAAAGAAGGATGTCATGAAGGAACTTCCTCCTAAAAGGGAACTTATTTTACGTGTTGAATTAAGCAGTAAACAGAAAGAATATTATAAGGCAATTCTGACCCGTAACTATCAGATATTAACTCGTCGTGGTGGTCCACAGATTTCTCTTATTAATGTTGTTATGGAGTTGAGGAAACTTTGTTGTCACCCTTACATGTTAGAAGGAGTTGAACCAGATATCGACGATGCAAAAGAATCACATAAACAGCTATTGGAATCATCGGGGAAGTTACAATTGTTGGACAAAATGATGTTGAAGCTTAAAGAGCAAGGACATCGAGTACTCATTTATTCACAATTTCAGCACATGTTGGACTTGCTTGAAGATTACTGTACTTATAAGAATTGGCAATATGAAAGGATAGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTACGGATAGATCGGTTTAATGCTAAAAACTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCTGACACTGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACAAATAAGGTGATGATTTTTAGGCTCATAACACGGGAAACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTAGTCGTTGGGAGGCTGAAGACTCAAAATATTAACCAGGAAGAGTTAGATGATATCATAAGGTATGGGTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGCAAATCCCGCCAGATTCATTATGATGATGCAGCCATTGATAGATTATTGGATCGTGAACAAGTTGGAGATGAAGAAGCTACGTTAGATGATGAGGAGGAAGATGGATTTCTGAAGGCCTTTAAGGTGGCAAATTTTGAGTATATTGATGAAGCTGAGGCTGCAGCGGAAAAGGAGGCAGCACGAAAGAAAGCAATGGAGAATACATCTACTGTGCCCCCCACCGATAGATCAAATTACTGGGAGGAGTTATTAAAAGACAGATATGAAGTGCATAAACATGAAGAGTTCAATTCCCTGGGCAAAGGGAAGCGATCCCGCAAGATGATAAATTCTGTTGAGGAGGATGATCTTGCTGGTCTAGAAGATATAAGTTCTGAAGAAGAAGATGACAATTATGAAGCAAATCTTACTGACGGTGATTCAAATTCAACTGGAAATGCTTCAACTAGAAGGCCATACAGAAAGAAAGCCCGTGTAGCAGATAGCACAGAGCCACTTCCTCTGATGGAAGGCGAAGGAAAATCTTTCCGAATACTTGGTTTCAGTCAAAATCAGAGGGCAGCATTTGTGCAAATATTAATGAGGTTCGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAGCAGAAAACCTATGAAGAAATCAAAGATTATGGAATCCTGTTTCTGTCTCACATTGCAGAAGATATTACAGATGCCCCTACGTTCTCAGATGGGGTTCCTAAGGAAGGGCTTCGCATACAAGATGTCCTAGTCAGAATTGCTGTTCTTCTCTTGATAAGAGAGAAAGTGAAGTTTGCATCAGAAAATCTTGGTGCTCCACTTTTTTCAGATGACATTTTCTTACGCTACCCAGGTTTGAAGGGTACAAAGATATGGAAGGAGGAGCATGATTTAGTGTTACTGCGTGCCGTATTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAATTTACCTGCACCAGGACAAGTTGGATCTCAGGTGCAAAATGGTGCAAGTTTGACAAATGCAGAAGCACCCACCAACCAAACGACTGTAAGTGGTGAGAATGACGTAGCACCTGACAATACACATGGTTCTGGTGATGCTAGGAATCCAGCACAGATATATCAAGAGTCTTCCATAATATTTCATTTCAGAGACATGCAGAGAAGACAGGTTGAGTTCATTAAAAAGAGGGTGCTGCTCTTGGAAAAGGGGCTCAATGCTGAGTACCAGAAAGAATACTTCGGTGATTCGAAAGCAAATGAAACACATGAAGAACTTAAAAGTGAACCTAAGGTTACAAATGTGCCAAGTTATAAATCAGGGGATACTGACATTGAAATGGTTGATCATTTGCCTCAAGTAGAAGCAATAGCTTCAGAAGAAGTTTCTGTTGGTGCTTGTGATAATGATTCTGACCGATTGGAATTGATTCGTCTTTATAACGAGATGTGCAAGATTATGGAGGAGAATGCCATGGAATCAGATCAAACAGCTTTGGCAAGAGAACCAGCAGAAGTGAAAGTGCTTAACAACTTCCTTCCGCTAGAAACCATTTCTAAGGACATCAATAGAATTCTAACTCCTACTCAACAAAATTCAGAGAACAAATCGGAGGCTTTCGTGCATGGTGATGTTGGCGCATCCACATTTTCGGCTATCCCTCAAAATGACTGTAAAGCTGATAATACGGTACACGATAAGAGCAAGGATGTGGTAATAGAGTCTGAAGTTAAAAGAGAAAGCAGCCCTGACCTGGTAAAAGAGACGAATAAAATACCTAGTATTCCAGAGACGAGGGGAAGTGATATAGAAATGGGCGAAACAAAGAATGATGCCGAGTTAAATCAAAATACGGAGAAGTCTGGGCCCGGCGTGATTGTATTAGATGATTAA 4323 0.4037 MSSLVERLRVRSDRKPVYNIEDSDDDADFLPRKPGATDEKFERIVRSDAKENACQACGESENLLSCETCSYAYHPRCLLPPLKTPLPDSWRCPECVSPLNDIDKILDSEMRPTVAVDTDATKLGSKQIFVKQYLVKWKGLSYLHCIWVPEKEFLKAFKTHPRLKTKVNNFNRQMASINTSDEDFVAIRPEWTTVDRILACRDDGDEKEYLVKWKELSYDECNWEFESDISAFQPEIERFNRFQSRSRKHSSSKQKSSTMDGADSKKQQKEFHQYEHSPDFLSGGKLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLYGEGVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYEFYFPKNQKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDNASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKRELILRVELSSKQKEYYKAILTRNYQILTRRGGPQISLINVVMELRKLCCHPYMLEGVEPDIDDAKESHKQLLESSGKLQLLDKMMLKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRETIEERMMQMTKKKMVLEHLVVGRLKTQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEEATLDDEEEDGFLKAFKVANFEYIDEAEAAAEKEAARKKAMENTSTVPPTDRSNYWEELLKDRYEVHKHEEFNSLGKGKRSRKMINSVEEDDLAGLEDISSEEEDDNYEANLTDGDSNSTGNASTRRPYRKKARVADSTEPLPLMEGEGKSFRILGFSQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGILFLSHIAEDITDAPTFSDGVPKEGLRIQDVLVRIAVLLLIREKVKFASENLGAPLFSDDIFLRYPGLKGTKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPAPGQVGSQVQNGASLTNAEAPTNQTTVSGENDVAPDNTHGSGDARNPAQIYQESSIIFHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDSKANETHEELKSEPKVTNVPSYKSGDTDIEMVDHLPQVEAIASEEVSVGACDNDSDRLELIRLYNEMCKIMEENAMESDQTALAREPAEVKVLNNFLPLETISKDINRILTPTQQNSENKSEAFVHGDVGASTFSAIPQNDCKADNTVHDKSKDVVIESEVKRESSPDLVKETNKIPSIPETRGSDIEMGETKNDAELNQNTEKSGPGVIVLDD 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00458 1440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Bach12g00458 1440 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 29 1380 - -
Bach12g00458 1440 SMART helicmild6 638 722 IPR001650 -
Bach12g00458 1440 Pfam PHD-finger 54 96 IPR019787 -
Bach12g00458 1440 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Bach12g00458 1440 MobiDBLite consensus disorder prediction 242 269 - -
Bach12g00458 1440 CDD SF2_C_SNF 607 733 - -
Bach12g00458 1440 MobiDBLite consensus disorder prediction 1385 1440 - -
Bach12g00458 1440 Gene3D - 180 241 - -
Bach12g00458 1440 Gene3D - 278 528 IPR038718 -
Bach12g00458 1440 MobiDBLite consensus disorder prediction 1230 1251 - -
Bach12g00458 1440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Bach12g00458 1440 Coils Coil 838 858 - -
Bach12g00458 1440 SMART PHD_3 53 96 IPR001965 -
Bach12g00458 1440 CDD CD1_tandem 98 170 - -
Bach12g00458 1440 SUPERFAMILY Chromo domain-like 178 242 IPR016197 -
Bach12g00458 1440 CDD CD2_tandem 190 241 - -
Bach12g00458 1440 MobiDBLite consensus disorder prediction 907 956 - -
Bach12g00458 1440 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Bach12g00458 1440 MobiDBLite consensus disorder prediction 926 940 - -
Bach12g00458 1440 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 157 IPR023780 -
Bach12g00458 1440 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Bach12g00458 1440 SMART DUF1087_2 844 909 IPR009463 -
Bach12g00458 1440 Pfam CHD subfamily II, SANT-like domain 937 1071 IPR009462 GO:0003677|GO:0006338
Bach12g00458 1440 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Bach12g00458 1440 Gene3D - 529 753 IPR027417 -
Bach12g00458 1440 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Bach12g00458 1440 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Bach12g00458 1440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Bach12g00458 1440 Gene3D - 100 175 - -
Bach12g00458 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 779 IPR027417 -
Bach12g00458 1440 Gene3D - 1041 1218 - -
Bach12g00458 1440 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Bach12g00458 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 519 IPR027417 -
Bach12g00458 1440 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Bach12g00458 1440 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Bach12g00458 1440 MobiDBLite consensus disorder prediction 907 925 - -
Bach12g00458 1440 SMART chromo_7 190 244 IPR000953 -
Bach12g00458 1440 SMART chromo_7 99 162 IPR000953 -
Bach12g00458 1440 SMART ultradead3 282 495 IPR014001 -
Bach12g00458 1440 MobiDBLite consensus disorder prediction 1155 1179 - -
Bach12g00458 1440 SMART DUF1086_2 911 1074 IPR009462 GO:0003677|GO:0006338
Bach12g00458 1440 Pfam CHD subfamily II, DUF1087 845 906 IPR009463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00458 Bach-Chr12 3110788 3125113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00458 308 783 RAD5 or RAD16-like Gene Family AT1G02670 22.523 2.44e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bach12g00458 SNF2_N 8.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00458 K11643 - gmx:100790230 2342