Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00402 ATGGCTCCAGTGAGTAGTCAGACCCGCAACAGAGAAGCTTGGACAGGTGAAGAGGACCAGAACCTGGTCCAAGCCATTGAAATTTATGGCCCGAAGAGGTGGAACATTGTTGCAGCCAAAGCAGGTCTAAATCGTTGTGGAAGAAGTTGCAGATTGAGATGGTTGAATTACCTTAGACCCGATATCAAGAGAGGCAACATATCAGACCAAGAGGAGGATTTAATATTAAGGCTTCATAAACTTTTGGGGAACAGGTGGTCGTTGATTGCTGGAAGACTTCCTGGTCGAACTGACAATGAGATTAAGAATTATTGGAACTCTCATCTCAGCAAGAAGATAAAGCTCCAAGACCAAAACAACGTTTTGAAAATAGAGTCCAGGCATACGCAGCCACCGGAGATAGATGCCCATGCAGTGAAGGTCATTGAGGATAGAGAAATAGCTACCAGTAAGGTTGGCGAGGAATCAAAGAATAGTTTTATTGAAGGTGGTGACTCGTTTCAATTTGATAACAACGAGGGCCCCCTAAATTTGGAATGGATGAGTCAATTTCTTGAGAGAGACGAAAGTTGGTTTGAATTTGCATAA 588 0.432 MAPVSSQTRNREAWTGEEDQNLVQAIEIYGPKRWNIVAAKAGLNRCGRSCRLRWLNYLRPDIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKLQDQNNVLKIESRHTQPPEIDAHAVKVIEDREIATSKVGEESKNSFIEGGDSFQFDNNEGPLNLEWMSQFLERDESWFEFA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00402 195 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Bach12g00402 195 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Bach12g00402 195 SMART sant 10 60 IPR001005 -
Bach12g00402 195 SMART sant 63 111 IPR001005 -
Bach12g00402 195 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 137 - -
Bach12g00402 195 FunFam MYB-related transcription factor 10 63 - -
Bach12g00402 195 Gene3D - 67 137 - -
Bach12g00402 195 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Bach12g00402 195 Gene3D - 3 64 - -
Bach12g00402 195 CDD SANT 68 109 IPR001005 -
Bach12g00402 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Bach12g00402 195 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Bach12g00402 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Bach12g00402 195 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Bach12g00402 195 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00402 Bach-Chr12 2682143 2682937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00402 14 151 MYB Transcription Factor Family AT5G40330 54.348 6.77e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bach12g00402 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00402 K09422 - qsu:111997867 256.914